Literature DB >> 33290564

Histones participate in base excision repair of 8-oxodGuo by transiently cross-linking with active repair intermediates in nucleosome core particles.

Mengtian Ren1, Mengdi Shang1, Huawei Wang1, Zhen Xi1, Chuanzheng Zhou1.   

Abstract

8-Oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodGuo) is a biomarker of oxidative DNA damage and can be repaired by hOGG1 and APE1 via the base excision repair (BER) pathway. In this work, we studied coordinated BER of 8-oxodGuo by hOGG1 and APE1 in nucleosome core particles and found that histones transiently formed DNA-protein cross-links (DPCs) with active repair intermediates such as 3'-phospho-α,β-unsaturated aldehyde (PUA) and 5'-deoxyribosephosphate (dRP). The effects of histone participation could be beneficial or deleterious to the BER process, depending on the circumstances. In the absence of APE1, histones enhanced the AP lyase activity of hOGG1 by cross-linking with 3'-PUA. However, the formed histone-PUA DPCs hampered the subsequent repair process. In the presence of APE1, both the AP lyase activity of hOGG1 and the formation of histone-PUA DPCs were suppressed. In this case, histones could catalyse removal of the 5'-dRP by transiently cross-linking with the active intermediate. That is, histones promoted the repair by acting as 5'-dRP lyases. Our findings demonstrate that histones participate in multiple steps of 8-oxodGuo repair in nucleosome core particles, highlighting the diverse roles that histones may play during DNA repair in eukaryotic cells.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33290564      PMCID: PMC7797075          DOI: 10.1093/nar/gkaa1153

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  Rapid DNA-protein cross-linking and strand scission by an abasic site in a nucleosome core particle.

Authors:  Jonathan T Sczepanski; Remus S Wong; Jeffrey N McKnight; Gregory D Bowman; Marc M Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

Review 2.  Oxidative DNA damage repair in mammalian cells: a new perspective.

Authors:  Tapas K Hazra; Aditi Das; Soumita Das; Sujata Choudhury; Yoke W Kow; Rabindra Roy
Journal:  DNA Repair (Amst)       Date:  2006-11-20

Review 3.  Base-excision repair of oxidative DNA damage.

Authors:  Sheila S David; Valerie L O'Shea; Sucharita Kundu
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

4.  New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.

Authors:  P T Lowary; J Widom
Journal:  J Mol Biol       Date:  1998-02-13       Impact factor: 5.469

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Oxidation of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Leads to Substantial DNA-Histone Cross-Links within Nucleosome Core Particles.

Authors:  Jing Bai; Yingqian Zhang; Zhen Xi; Marc M Greenberg; Chuanzheng Zhou
Journal:  Chem Res Toxicol       Date:  2018-11-19       Impact factor: 3.739

7.  Separation-of-function mutants unravel the dual-reaction mode of human 8-oxoguanine DNA glycosylase.

Authors:  Bjørn Dalhus; Monika Forsbring; Ina Høydal Helle; Erik Sebastian Vik; Rune Johansen Forstrøm; Paul Hoff Backe; Ingrun Alseth; Magnar Bjørås
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

8.  Nitrogen Mustard Induces Formation of DNA-Histone Cross-Links in Nucleosome Core Particles.

Authors:  Mengdi Shang; Mengtian Ren; Chuanzheng Zhou
Journal:  Chem Res Toxicol       Date:  2019-11-21       Impact factor: 3.739

Review 9.  Analysis of a form of oxidative DNA damage, 8-hydroxy-2'-deoxyguanosine, as a marker of cellular oxidative stress during carcinogenesis.

Authors:  H Kasai
Journal:  Mutat Res       Date:  1997-12       Impact factor: 2.433

10.  The critical active-site amine of the human 8-oxoguanine DNA glycosylase, hOgg1: direct identification, ablation and chemical reconstitution.

Authors:  H M Nash; R Lu; W S Lane; G L Verdine
Journal:  Chem Biol       Date:  1997-09
View more
  8 in total

1.  Formation and Repair of an Interstrand DNA Cross-Link Arising from a Common Endogenous Lesion.

Authors:  Kurt Housh; Jay S Jha; Zhiyu Yang; Tuhin Haldar; Kevin M Johnson; Jiekai Yin; Yinsheng Wang; Kent S Gates
Journal:  J Am Chem Soc       Date:  2021-09-13       Impact factor: 15.419

2.  Nucleosomes enter cells by clathrin- and caveolin-dependent endocytosis.

Authors:  Huawei Wang; Xiajing Shan; Mengtian Ren; Mengdi Shang; Chuanzheng Zhou
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

Review 3.  Obstacles and opportunities for base excision repair in chromatin.

Authors:  Dana J Biechele-Speziale; Treshaun B Sutton; Sarah Delaney
Journal:  DNA Repair (Amst)       Date:  2022-05-28

4.  Histone variants H3.3 and H2A.Z/H3.3 facilitate excision of uracil from nucleosome core particles.

Authors:  Chuxuan Li; Katelyn L Rioux; Sarah Delaney
Journal:  DNA Repair (Amst)       Date:  2022-06-12

5.  Reconsidering the Chemical Nature of Strand Breaks Derived from Abasic Sites in Cellular DNA: Evidence for 3'-Glutathionylation.

Authors:  Jay S Jha; Jiekai Yin; Tuhin Haldar; Zhiyu Yang; Yinsheng Wang; Kent S Gates
Journal:  J Am Chem Soc       Date:  2022-05-25       Impact factor: 16.383

6.  Unexpected Complexity in the Products Arising from NaOH-, Heat-, Amine-, and Glycosylase-Induced Strand Cleavage at an Abasic Site in DNA.

Authors:  Tuhin Haldar; Jay S Jha; Zhiyu Yang; Christopher Nel; Kurt Housh; Orla J Cassidy; Kent S Gates
Journal:  Chem Res Toxicol       Date:  2022-02-07       Impact factor: 3.973

7.  Participation of Histones in DNA Damage and Repair within Nucleosome Core Particles: Mechanism and Applications.

Authors:  Mengtian Ren; Marc M Greenberg; Chuanzheng Zhou
Journal:  Acc Chem Res       Date:  2022-03-10       Impact factor: 22.384

8.  Human TDP1, APE1 and TREX1 repair 3'-DNA-peptide/protein cross-links arising from abasic sites in vitro.

Authors:  Xiaoying Wei; Zhishuo Wang; Caroline Hinson; Kun Yang
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.