Literature DB >> 30381424

Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.

Tomoyuki Mano1,2, Alexandre Albanese3, Hans-Ulrich Dodt4,5, Ali Erturk6,7,8, Viviana Gradinaru9, Jennifer B Treweek9,10, Atsushi Miyawaki11,12, Kwanghun Chung13,14,15,16,17, Hiroki R Ueda18,19,20.   

Abstract

In this photo essay, we present a sampling of technologies from laboratories at the forefront of whole-brain clearing and imaging for high-resolution analysis of cell populations and neuronal circuits. The data presented here were provided for the eponymous Mini-Symposium presented at the Society for Neuroscience's 2018 annual meeting.
Copyright © 2018 the authors 0270-6474/18/389330-08$15.00/0.

Mesh：

Year:  2018        PMID： 30381424      PMCID： PMC6706004          DOI： 10.1523/JNEUROSCI.1677-18.2018

Source DB:  PubMed          Journal:  J Neurosci        ISSN： 0270-6474            Impact factor:   6.167


  32 in total

1.  Whole-body imaging with single-cell resolution by tissue decolorization.

Authors:  Kazuki Tainaka; Shimpei I Kubota; Takeru Q Suyama; Etsuo A Susaki; Dimitri Perrin; Maki Ukai-Tadenuma; Hideki Ukai; Hiroki R Ueda
Journal:  Cell       Date:  2014-11-06       Impact factor: 41.582

2.  Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Fumiaki Kishino; Takehiro Tawara; Tomonobu M Watanabe; Chihiro Yokoyama; Hirotaka Onoe; Megumi Eguchi; Shun Yamaguchi; Takaya Abe; Hiroshi Kiyonari; Yoshihiro Shimizu; Atsushi Miyawaki; Hideo Yokota; Hiroki R Ueda
Journal:  Cell       Date:  2014-04-17       Impact factor: 41.582

3.  Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.

Authors:  Kazuki Tainaka; Tatsuya C Murakami; Etsuo A Susaki; Chika Shimizu; Rie Saito; Kei Takahashi; Akiko Hayashi-Takagi; Hiroshi Sekiya; Yasunobu Arima; Satoshi Nojima; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Masaaki Murakami; Kenji F Tanaka; Masamitsu Iino; Haruo Kasai; Toshikuni Sasaoka; Kazuto Kobayashi; Kohei Miyazono; Eiichi Morii; Tadashi Isa; Masashi Fukayama; Akiyoshi Kakita; Hiroki R Ueda
Journal:  Cell Rep       Date:  2018-08-21       Impact factor: 9.423

4.  Shrinkage-mediated imaging of entire organs and organisms using uDISCO.

Authors:  Chenchen Pan; Ruiyao Cai; Francesca Paola Quacquarelli; Alireza Ghasemigharagoz; Athanasios Lourbopoulos; Paweł Matryba; Nikolaus Plesnila; Martin Dichgans; Farida Hellal; Ali Ertürk
Journal:  Nat Methods       Date:  2016-08-22       Impact factor: 28.547

Review 5.  Viral Strategies for Targeting the Central and Peripheral Nervous Systems.

Authors:  Claire N Bedbrook; Benjamin E Deverman; Viviana Gradinaru
Journal:  Annu Rev Neurosci       Date:  2018-04-25       Impact factor: 12.449

Review 6.  Hydrogel-Tissue Chemistry: Principles and Applications.

Authors:  Viviana Gradinaru; Jennifer Treweek; Kristin Overton; Karl Deisseroth
Journal:  Annu Rev Biophys       Date:  2018-05-20       Impact factor: 12.981

7.  3D-ultramicroscopy utilizing aspheric optics.

Authors:  Saiedeh Saghafi; Klaus Becker; Christian Hahn; Hans-Ulrich Dodt
Journal:  J Biophotonics       Date:  2013-07-17       Impact factor: 3.207

8.  Q&A: How can advances in tissue clearing and optogenetics contribute to our understanding of normal and diseased biology?

Authors:  Alon Greenbaum; Min J Jang; Collin Challis; Viviana Gradinaru
Journal:  BMC Biol       Date:  2017-09-25       Impact factor: 7.431

9.  Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain.

Authors:  Benjamin E Deverman; Piers L Pravdo; Bryan P Simpson; Sripriya Ravindra Kumar; Ken Y Chan; Abhik Banerjee; Wei-Li Wu; Bin Yang; Nina Huber; Sergiu P Pasca; Viviana Gradinaru
Journal:  Nat Biotechnol       Date:  2016-02-01       Impact factor: 54.908

10.  Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems.

Authors:  Ken Y Chan; Min J Jang; Bryan B Yoo; Alon Greenbaum; Namita Ravi; Wei-Li Wu; Luis Sánchez-Guardado; Carlos Lois; Sarkis K Mazmanian; Benjamin E Deverman; Viviana Gradinaru
Journal:  Nat Neurosci       Date:  2017-06-26       Impact factor: 24.884
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  14 in total

1.  CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping.

Authors:  Tomoyuki Mano; Ken Murata; Kazuhiro Kon; Chika Shimizu; Hiroaki Ono; Shoi Shi; Rikuhiro G Yamada; Kazunari Miyamichi; Etsuo A Susaki; Kazushige Touhara; Hiroki R Ueda
Journal:  Cell Rep Methods       Date:  2021-06-21

2.  Looking through Brains with Fast Passive CLARITY: Zebrafish, Rodents, Non-human Primates and Humans.

Authors:  Farzad Mortazavi; Alexander J Stankiewicz; Irina V Zhdanova
Journal:  Bio Protoc       Date:  2019-08-05

3.  Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain.

Authors:  David M Young; Siavash Fazel Darbandi; Grace Schwartz; Zachary Bonzell; Deniz Yuruk; Mai Nojima; Laurent C Gole; John Lr Rubenstein; Weimiao Yu; Stephan J Sanders
Journal:  Elife       Date:  2021-02-11       Impact factor: 8.140

Review 4.  Towards organism-level systems biology by next-generation genetics and whole-organ cell profiling.

Authors:  Yoichi Minami; Yufei Yuan; Hiroki R Ueda
Journal:  Biophys Rev       Date:  2021-11-18

Review 5.  From whole organism to ultrastructure: progress in axonal imaging for decoding circuit development.

Authors:  Cory J Weaver; Fabienne E Poulain
Journal:  Development       Date:  2021-07-30       Impact factor: 6.862

Review 6.  In vivo glial trans-differentiation for neuronal replacement and functional recovery in central nervous system.

Authors:  Cheng Qian; Bryan Dong; Xu-Yang Wang; Feng-Quan Zhou
Journal:  FEBS J       Date:  2021-01-09       Impact factor: 5.622

7.  Deep learning reveals 3D atherosclerotic plaque distribution and composition.

Authors:  Vanessa Isabell Jurtz; Grethe Skovbjerg; Casper Gravesen Salinas; Urmas Roostalu; Louise Pedersen; Jacob Hecksher-Sørensen; Bidda Rolin; Michael Nyberg; Martijn van de Bunt; Camilla Ingvorsen
Journal:  Sci Rep       Date:  2020-12-09       Impact factor: 4.379

8.  3D visualization of macromolecule synthesis.

Authors:  Timothy J Duerr; Ester Comellas; Eun Kyung Jeon; Johanna E Farkas; Marylou Joetzjer; Julien Garnier; Sandra J Shefelbine; James R Monaghan
Journal:  Elife       Date:  2020-10-14       Impact factor: 8.140

Review 9.  Photoacoustic Neuroimaging - Perspectives on a Maturing Imaging Technique and its Applications in Neuroscience.

Authors:  Silviu-Vasile Bodea; Gil Gregor Westmeyer
Journal:  Front Neurosci       Date:  2021-06-10       Impact factor: 4.677

10.  Accurate Localization of Linear Probe Electrode Arrays across Multiple Brains.

Authors:  Liu D Liu; Susu Chen; Han Hou; Steven J West; Mayo Faulkner; Michael N Economo; Nuo Li; Karel Svoboda
Journal:  eNeuro       Date:  2021-11-12
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