Literature DB >> 29792820

Hydrogel-Tissue Chemistry: Principles and Applications.

Viviana Gradinaru1, Jennifer Treweek1, Kristin Overton2, Karl Deisseroth2,3,4.   

Abstract

Over the past five years, a rapidly developing experimental approach has enabled high-resolution and high-content information retrieval from intact multicellular animal (metazoan) systems. New chemical and physical forms are created in the hydrogel-tissue chemistry process, and the retention and retrieval of crucial phenotypic information regarding constituent cells and molecules (and their joint interrelationships) are thereby enabled. For example, rich data sets defining both single-cell-resolution gene expression and single-cell-resolution activity during behavior can now be collected while still preserving information on three-dimensional positioning and/or brain-wide wiring of those very same neurons-even within vertebrate brains. This new approach and its variants, as applied to neuroscience, are beginning to illuminate the fundamental cellular and chemical representations of sensation, cognition, and action. More generally, reimagining metazoans as metareactants-or positionally defined three-dimensional graphs of constituent chemicals made available for ongoing functionalization, transformation, and readout-is stimulating innovation across biology and medicine.

Entities:  

Keywords:  CLARITY; HTC; clearing; hydrogel-tissue; hydrogels; metareactant

Mesh:

Substances:

Year:  2018        PMID: 29792820      PMCID: PMC6359929          DOI: 10.1146/annurev-biophys-070317-032905

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  146 in total

1.  Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Hiroko Yukinaga; Akihiro Kuno; Hiroki R Ueda
Journal:  Nat Protoc       Date:  2015-10-08       Impact factor: 13.491

2.  TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images.

Authors:  Alessandro Bria; Giulio Iannello; Leonardo Onofri; Hanchuan Peng
Journal:  Nat Methods       Date:  2016-03       Impact factor: 28.547

3.  Somatostatin-positive interneurons in the dentate gyrus of mice provide local- and long-range septal synaptic inhibition.

Authors:  Mei Yuan; Thomas Meyer; Christoph Benkowitz; Shakuntala Savanthrapadian; Laura Ansel-Bollepalli; Angelica Foggetti; Peer Wulff; Pepe Alcami; Claudio Elgueta; Marlene Bartos
Journal:  Elife       Date:  2017-04-03       Impact factor: 8.140

4.  Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation.

Authors:  Yi Cui; Xiaolei Wang; Wen Ren; Jing Liu; Joseph Irudayaraj
Journal:  ACS Nano       Date:  2016-02-24       Impact factor: 15.881

5.  ScaleS: an optical clearing palette for biological imaging.

Authors:  Hiroshi Hama; Hiroyuki Hioki; Kana Namiki; Tetsushi Hoshida; Hiroshi Kurokawa; Fumiyoshi Ishidate; Takeshi Kaneko; Takumi Akagi; Takashi Saito; Takaomi Saido; Atsushi Miyawaki
Journal:  Nat Neurosci       Date:  2015-09-14       Impact factor: 24.884

6.  Fast immuno-labeling by electrophoretically driven infiltration for intact tissue imaging.

Authors:  Jun Li; Daniel M Czajkowsky; Xiaowei Li; Zhifeng Shao
Journal:  Sci Rep       Date:  2015-05-27       Impact factor: 4.379

7.  Fluorescent-protein stabilization and high-resolution imaging of cleared, intact mouse brains.

Authors:  Martin K Schwarz; Annemarie Scherbarth; Rolf Sprengel; Johann Engelhardt; Patrick Theer; Guenter Giese
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

8.  Longitudinal imaging of HIV-1 spread in humanized mice with parallel 3D immunofluorescence and electron tomography.

Authors:  Collin Kieffer; Mark S Ladinsky; Allen Ninh; Rachel P Galimidi; Pamela J Bjorkman
Journal:  Elife       Date:  2017-02-15       Impact factor: 8.140

9.  Intact-Brain Analyses Reveal Distinct Information Carried by SNc Dopamine Subcircuits.

Authors:  Talia N Lerner; Carrie Shilyansky; Thomas J Davidson; Kathryn E Evans; Kevin T Beier; Kelly A Zalocusky; Ailey K Crow; Robert C Malenka; Liqun Luo; Raju Tomer; Karl Deisseroth
Journal:  Cell       Date:  2015-07-30       Impact factor: 41.582

10.  Large-scale tissue clearing (PACT): Technical evaluation and new perspectives in immunofluorescence, histology, and ultrastructure.

Authors:  Peter H Neckel; Ulrich Mattheus; Bernhard Hirt; Lothar Just; Andreas F Mack
Journal:  Sci Rep       Date:  2016-09-29       Impact factor: 4.379

View more
  34 in total

Review 1.  Advanced imaging and labelling methods to decipher brain cell organization and function.

Authors:  Daniel Choquet; Matthieu Sainlos; Jean-Baptiste Sibarita
Journal:  Nat Rev Neurosci       Date:  2021-03-12       Impact factor: 34.870

Review 2.  Tutorial: practical considerations for tissue clearing and imaging.

Authors:  Kurt R Weiss; Fabian F Voigt; Douglas P Shepherd; Jan Huisken
Journal:  Nat Protoc       Date:  2021-05-21       Impact factor: 13.491

Review 3.  Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Tomoyuki Mano; Alexandre Albanese; Hans-Ulrich Dodt; Ali Erturk; Viviana Gradinaru; Jennifer B Treweek; Atsushi Miyawaki; Kwanghun Chung; Hiroki R Ueda
Journal:  J Neurosci       Date:  2018-10-31       Impact factor: 6.167

Review 4.  Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Hiroki R Ueda; Hans-Ulrich Dodt; Pavel Osten; Michael N Economo; Jayaram Chandrashekar; Philipp J Keller
Journal:  Neuron       Date:  2020-05-06       Impact factor: 17.173

5.  Genetically targeted chemical assembly of functional materials in living cells, tissues, and animals.

Authors:  Jia Liu; Yoon Seok Kim; Claire E Richardson; Ariane Tom; Charu Ramakrishnan; Fikri Birey; Toru Katsumata; Shucheng Chen; Cheng Wang; Xiao Wang; Lydia-Marie Joubert; Yuanwen Jiang; Huiliang Wang; Lief E Fenno; Jeffrey B-H Tok; Sergiu P Pașca; Kang Shen; Zhenan Bao; Karl Deisseroth
Journal:  Science       Date:  2020-03-20       Impact factor: 47.728

Review 6.  Tissue clearing and its applications in neuroscience.

Authors:  Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Journal:  Nat Rev Neurosci       Date:  2020-02       Impact factor: 34.870

7.  Form and function in the brain.

Authors:  Karl Deisseroth; Jane E Haley; Arpan R Mehta
Journal:  Lancet Neurol       Date:  2021-07       Impact factor: 44.182

8.  The SHREAD gene therapy platform for paracrine delivery improves tumor localization and intratumoral effects of a clinical antibody.

Authors:  Sheena N Smith; Rajib Schubert; Branko Simic; Dominik Brücher; Markus Schmid; Niels Kirk; Patrick C Freitag; Viviana Gradinaru; Andreas Plückthun
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

Review 9.  Pancreas Optical Clearing and 3-D Microscopy in Health and Diabetes.

Authors:  Martha Campbell-Thompson; Shiue-Cheng Tang
Journal:  Front Endocrinol (Lausanne)       Date:  2021-04-26       Impact factor: 6.055

10.  Three-dimensional intact-tissue sequencing of single-cell transcriptional states.

Authors:  Xiao Wang; William E Allen; Matthew A Wright; Emily L Sylwestrak; Nikolay Samusik; Sam Vesuna; Kathryn Evans; Cindy Liu; Charu Ramakrishnan; Jia Liu; Garry P Nolan; Felice-Alessio Bava; Karl Deisseroth
Journal:  Science       Date:  2018-06-21       Impact factor: 47.728

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.