Literature DB >> 27548807

Shrinkage-mediated imaging of entire organs and organisms using uDISCO.

Chenchen Pan1,2, Ruiyao Cai1,2, Francesca Paola Quacquarelli1, Alireza Ghasemigharagoz1, Athanasios Lourbopoulos1, Paweł Matryba1, Nikolaus Plesnila1,2,3, Martin Dichgans1,2,3,4, Farida Hellal1,3, Ali Ertürk1,2,3.   

Abstract

Recent tissue-clearing approaches have become important alternatives to standard histology approaches. However, light scattering in thick tissues and the size restrictions on samples that can be imaged with standard light-sheet microscopy pose limitations for analyzing large samples such as an entire rodent body. We developed 'ultimate DISCO' (uDISCO) clearing to overcome these limitations in volumetric imaging. uDISCO preserves fluorescent proteins over months and renders intact organs and rodent bodies transparent while reducing their size up to 65%. We used uDISCO to image neuronal connections and vasculature from head to toe over 7 cm and to perform unbiased screening of transplanted stem cells within the entire body of adult mice. uDISCO is compatible with diverse labeling methods and archival human tissue, and it can readily be used in various biomedical applications to study organization of large organ systems throughout entire organisms.

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Year:  2016        PMID: 27548807     DOI: 10.1038/nmeth.3964

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  48 in total

1.  Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Hiroko Yukinaga; Akihiro Kuno; Hiroki R Ueda
Journal:  Nat Protoc       Date:  2015-10-08       Impact factor: 13.491

2.  iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.

Authors:  Nicolas Renier; Zhuhao Wu; David J Simon; Jing Yang; Pablo Ariel; Marc Tessier-Lavigne
Journal:  Cell       Date:  2014-10-30       Impact factor: 41.582

3.  Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Fumiaki Kishino; Takehiro Tawara; Tomonobu M Watanabe; Chihiro Yokoyama; Hirotaka Onoe; Megumi Eguchi; Shun Yamaguchi; Takaya Abe; Hiroshi Kiyonari; Yoshihiro Shimizu; Atsushi Miyawaki; Hideo Yokota; Hiroki R Ueda
Journal:  Cell       Date:  2014-04-17       Impact factor: 41.582

Review 4.  Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals.

Authors:  Etsuo A Susaki; Hiroki R Ueda
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

5.  A simple method for 3D analysis of immunolabeled axonal tracts in a transparent nervous system.

Authors:  Morgane Belle; David Godefroy; Chloé Dominici; Céline Heitz-Marchaland; Pavol Zelina; Farida Hellal; Frank Bradke; Alain Chédotal
Journal:  Cell Rep       Date:  2014-11-06       Impact factor: 9.423

6.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

7.  Single-cell phenotyping within transparent intact tissue through whole-body clearing.

Authors:  Bin Yang; Jennifer B Treweek; Rajan P Kulkarni; Benjamin E Deverman; Chun-Kan Chen; Eric Lubeck; Sheel Shah; Long Cai; Viviana Gradinaru
Journal:  Cell       Date:  2014-07-31       Impact factor: 41.582

8.  Technique for dissection and measurement of refractive index of osteones.

Authors:  A ASCENZI; C FABRY
Journal:  J Biophys Biochem Cytol       Date:  1959-08

Review 9.  Mesenchymal stem/stromal cells as a delivery platform in cell and gene therapies.

Authors:  Naomi D'souza; Filippo Rossignoli; Giulia Golinelli; Giulia Grisendi; Carlotta Spano; Olivia Candini; Satoru Osturu; Fabio Catani; Paolo Paolucci; Edwin M Horwitz; Massimo Dominici
Journal:  BMC Med       Date:  2015-08-12       Impact factor: 8.775

10.  Nanoscale imaging of RNA with expansion microscopy.

Authors:  Fei Chen; Asmamaw T Wassie; Allison J Cote; Anubhav Sinha; Shahar Alon; Shoh Asano; Evan R Daugharthy; Jae-Byum Chang; Adam Marblestone; George M Church; Arjun Raj; Edward S Boyden
Journal:  Nat Methods       Date:  2016-07-04       Impact factor: 28.547

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  179 in total

Review 1.  A beginner's guide to tissue clearing.

Authors:  Pablo Ariel
Journal:  Int J Biochem Cell Biol       Date:  2017-01-07       Impact factor: 5.085

2.  Tissue Clearing and Its Application to Bone and Dental Tissues.

Authors:  D Jing; Y Yi; W Luo; S Zhang; Q Yuan; J Wang; E Lachika; Z Zhao; H Zhao
Journal:  J Dent Res       Date:  2019-04-22       Impact factor: 6.116

3.  Ultrafast optical clearing method for three-dimensional imaging with cellular resolution.

Authors:  Xinpei Zhu; Limeng Huang; Yao Zheng; Yanchun Song; Qiaoqi Xu; Jiahao Wang; Ke Si; Shumin Duan; Wei Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-17       Impact factor: 11.205

4.  Tissue Optical Clearing for Biomedical Imaging: From In Vitro to In Vivo.

Authors:  Tingting Yu; Dongyu Li; Dan Zhu
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 5.  Tutorial: practical considerations for tissue clearing and imaging.

Authors:  Kurt R Weiss; Fabian F Voigt; Douglas P Shepherd; Jan Huisken
Journal:  Nat Protoc       Date:  2021-05-21       Impact factor: 13.491

6.  GDNF promotes hair formation and cutaneous wound healing by targeting bulge stem cells.

Authors:  Thomas S Lisse; Manju Sharma; Neda Vishlaghi; Sri Ramulu Pullagura; Robert E Braun
Journal:  NPJ Regen Med       Date:  2020-06-12

Review 7.  Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Tomoyuki Mano; Alexandre Albanese; Hans-Ulrich Dodt; Ali Erturk; Viviana Gradinaru; Jennifer B Treweek; Atsushi Miyawaki; Kwanghun Chung; Hiroki R Ueda
Journal:  J Neurosci       Date:  2018-10-31       Impact factor: 6.167

8.  'Invisible' mice reveal anatomical secrets.

Authors:  Sara Reardon
Journal:  Nature       Date:  2018-11       Impact factor: 49.962

9.  Three-Dimensional Analysis of the Human Pancreas.

Authors:  Jonas L Fowler; Steve Seung-Young Lee; Zachary C Wesner; Scott K Olehnik; Stephen J Kron; Manami Hara
Journal:  Endocrinology       Date:  2018-03-01       Impact factor: 4.736

10.  Revisiting the role of Dcc in visual system development with a novel eye clearing method.

Authors:  Robin J Vigouroux; Quénol Cesar; Alain Chédotal; Kim Tuyen Nguyen-Ba-Charvet
Journal:  Elife       Date:  2020-02-25       Impact factor: 8.140

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