Literature DB >> 30372555

Improving Gene Editing Outcomes in Human Hematopoietic Stem and Progenitor Cells by Temporal Control of DNA Repair.

Anastasia Lomova1,2, Danielle N Clark2, Beatriz Campo-Fernandez2, Carmen Flores-Bjurström2, Michael L Kaufman2, Sorel Fitz-Gibbon3, Xiaoyan Wang4, Eric Y Miyahira2, Devin Brown2, Mark A DeWitt5,6, Jacob E Corn5,6, Roger P Hollis2, Zulema Romero2, Donald B Kohn1,2,7.   

Abstract

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated system (Cas9)-mediated gene editing of human hematopoietic stem cells (hHSCs) is a promising strategy for the treatment of genetic blood diseases through site-specific correction of identified causal mutations. However, clinical translation is hindered by low ratio of precise gene modification using the corrective donor template (homology-directed repair, HDR) to gene disruption (nonhomologous end joining, NHEJ) in hHSCs. By using a modified version of Cas9 with reduced nuclease activity in G1 phase of cell cycle when HDR cannot occur, and transiently increasing the proportion of cells in HDR-preferred phases (S/G2), we achieved a four-fold improvement in HDR/NHEJ ratio over the control condition in vitro, and a significant improvement after xenotransplantation of edited hHSCs into immunodeficient mice. This strategy for improving gene editing outcomes in hHSCs has important implications for the field of gene therapy, and can be applied to diseases where increased HDR/NHEJ ratio is critical for therapeutic success. Stem Cells 2019;37:284-294. © AlphaMed Press 2018.

Entities:  

Keywords:  Adult hematopoietic stem cells; CD34+; CRISPR; Cell cycle; Clinical translation; Gene therapy; Hematopoietic stem cells (HSCs); Stem/progenitor cell

Mesh:

Year:  2018        PMID: 30372555      PMCID: PMC6368869          DOI: 10.1002/stem.2935

Source DB:  PubMed          Journal:  Stem Cells        ISSN: 1066-5099            Impact factor:   6.277


  51 in total

1.  Identification of a hierarchy of multipotent hematopoietic progenitors in human cord blood.

Authors:  Ravindra Majeti; Christopher Y Park; Irving L Weissman
Journal:  Cell Stem Cell       Date:  2007-12-13       Impact factor: 24.633

2.  Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells.

Authors:  Mark A DeWitt; Wendy Magis; Nicolas L Bray; Tianjiao Wang; Jennifer R Berman; Fabrizia Urbinati; Seok-Jin Heo; Therese Mitros; Denise P Muñoz; Dario Boffelli; Donald B Kohn; Mark C Walters; Dana Carroll; David I K Martin; Jacob E Corn
Journal:  Sci Transl Med       Date:  2016-10-12       Impact factor: 17.956

3.  A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.

Authors:  Cristina Escribano-Díaz; Alexandre Orthwein; Amélie Fradet-Turcotte; Mengtan Xing; Jordan T F Young; Ján Tkáč; Michael A Cook; Adam P Rosebrock; Meagan Munro; Marella D Canny; Dongyi Xu; Daniel Durocher
Journal:  Mol Cell       Date:  2013-01-17       Impact factor: 17.970

4.  Gene Therapy in a Patient with Sickle Cell Disease.

Authors:  Jean-Antoine Ribeil; Salima Hacein-Bey-Abina; Emmanuel Payen; Alessandra Magnani; Michaela Semeraro; Elisa Magrin; Laure Caccavelli; Benedicte Neven; Philippe Bourget; Wassim El Nemer; Pablo Bartolucci; Leslie Weber; Hervé Puy; Jean-François Meritet; David Grevent; Yves Beuzard; Stany Chrétien; Thibaud Lefebvre; Robert W Ross; Olivier Negre; Gabor Veres; Laura Sandler; Sandeep Soni; Mariane de Montalembert; Stéphane Blanche; Philippe Leboulch; Marina Cavazzana
Journal:  N Engl J Med       Date:  2017-03-02       Impact factor: 91.245

5.  Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA.

Authors:  Christopher D Richardson; Graham J Ray; Mark A DeWitt; Gemma L Curie; Jacob E Corn
Journal:  Nat Biotechnol       Date:  2016-01-20       Impact factor: 54.908

6.  Highly efficient large-scale lentiviral vector concentration by tandem tangential flow filtration.

Authors:  Aaron R Cooper; Sanjeet Patel; Shantha Senadheera; Kathrin Plath; Donald B Kohn; Roger P Hollis
Journal:  J Virol Methods       Date:  2011-07-18       Impact factor: 2.014

7.  Nonmyeloablative HLA-matched sibling allogeneic hematopoietic stem cell transplantation for severe sickle cell phenotype.

Authors:  Matthew M Hsieh; Courtney D Fitzhugh; R Patrick Weitzel; Mary E Link; Wynona A Coles; Xiongce Zhao; Griffin P Rodgers; Jonathan D Powell; John F Tisdale
Journal:  JAMA       Date:  2014-07-02       Impact factor: 56.272

8.  Repair of double-strand breaks induced by CRISPR-Cas9 leads to large deletions and complex rearrangements.

Authors:  Michael Kosicki; Kärt Tomberg; Allan Bradley
Journal:  Nat Biotechnol       Date:  2018-07-16       Impact factor: 54.908

9.  Inhibition of 53BP1 favors homology-dependent DNA repair and increases CRISPR-Cas9 genome-editing efficiency.

Authors:  Marella D Canny; Nathalie Moatti; Leo C K Wan; Amélie Fradet-Turcotte; Danielle Krasner; Pedro A Mateos-Gomez; Michal Zimmermann; Alexandre Orthwein; Yu-Chi Juang; Wei Zhang; Sylvie M Noordermeer; Eduardo Seclen; Marcus D Wilson; Andrew Vorobyov; Meagan Munro; Andreas Ernst; Timothy F Ng; Tiffany Cho; Paula M Cannon; Sachdev S Sidhu; Frank Sicheri; Daniel Durocher
Journal:  Nat Biotechnol       Date:  2017-11-27       Impact factor: 54.908

10.  Pharmacological inhibition of DNA-PK stimulates Cas9-mediated genome editing.

Authors:  Francis Robert; Mathilde Barbeau; Sylvain Éthier; Josée Dostie; Jerry Pelletier
Journal:  Genome Med       Date:  2015-08-27       Impact factor: 11.117

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  28 in total

1.  Editing the Sickle Cell Disease Mutation in Human Hematopoietic Stem Cells: Comparison of Endonucleases and Homologous Donor Templates.

Authors:  Zulema Romero; Anastasia Lomova; Suzanne Said; Alexandra Miggelbrink; Caroline Y Kuo; Beatriz Campo-Fernandez; Megan D Hoban; Katelyn E Masiuk; Danielle N Clark; Joseph Long; Julie M Sanchez; Miriam Velez; Eric Miyahira; Ruixue Zhang; Devin Brown; Xiaoyan Wang; Yerbol Z Kurmangaliyev; Roger P Hollis; Donald B Kohn
Journal:  Mol Ther       Date:  2019-05-24       Impact factor: 11.454

2.  Genome editing strategies for fetal hemoglobin induction in beta-hemoglobinopathies.

Authors:  Selami Demirci; Alexis Leonard; John F Tisdale
Journal:  Hum Mol Genet       Date:  2020-09-30       Impact factor: 6.150

3.  Homologous Recombination-Based Genome Editing by Clade F AAVs Is Inefficient in the Absence of a Targeted DNA Break.

Authors:  Geoffrey L Rogers; Hsu-Yu Chen; Heidy Morales; Paula M Cannon
Journal:  Mol Ther       Date:  2019-09-09       Impact factor: 11.454

Review 4.  Advances in genome editing through control of DNA repair pathways.

Authors:  Charles D Yeh; Christopher D Richardson; Jacob E Corn
Journal:  Nat Cell Biol       Date:  2019-12-02       Impact factor: 28.824

5.  Rational Selection of CRISPR-Cas9 Guide RNAs for Homology-Directed Genome Editing.

Authors:  Kristina J Tatiossian; Robert D E Clark; Chun Huang; Matthew E Thornton; Brendan H Grubbs; Paula M Cannon
Journal:  Mol Ther       Date:  2020-10-14       Impact factor: 11.454

6.  Enhanced homology-directed repair for highly efficient gene editing in hematopoietic stem/progenitor cells.

Authors:  Suk See De Ravin; Julie Brault; Ronald J Meis; Siyuan Liu; Linhong Li; Mara Pavel-Dinu; Cicera R Lazzarotto; Taylor Liu; Sherry M Koontz; Uimook Choi; Colin L Sweeney; Narda Theobald; GaHyun Lee; Aaron B Clark; Sandra S Burkett; Benjamin P Kleinstiver; Matthew H Porteus; Shengdar Tsai; Douglas B Kuhns; Gary A Dahl; Stephen Headey; Xiaolin Wu; Harry L Malech
Journal:  Blood       Date:  2021-05-13       Impact factor: 22.113

7.  Safe and Effective In Vivo Targeting and Gene Editing in Hematopoietic Stem Cells: Strategies for Accelerating Development.

Authors:  Paula Cannon; Aravind Asokan; Agnieszka Czechowicz; Paula Hammond; Donald B Kohn; Andre Lieber; Punam Malik; Peter Marks; Matthew Porteus; Els Verhoeyen; Drew Weissman; Irving Weissman; Hans-Peter Kiem
Journal:  Hum Gene Ther       Date:  2021-01       Impact factor: 5.695

Review 8.  CRISPR/Cas9 gene editing for curing sickle cell disease.

Authors:  So Hyun Park; Gang Bao
Journal:  Transfus Apher Sci       Date:  2021-01-10       Impact factor: 1.764

9.  Chromothripsis as an on-target consequence of CRISPR-Cas9 genome editing.

Authors:  Mitchell L Leibowitz; Stamatis Papathanasiou; Phillip A Doerfler; Logan J Blaine; Lili Sun; Yu Yao; Cheng-Zhong Zhang; Mitchell J Weiss; David Pellman
Journal:  Nat Genet       Date:  2021-04-12       Impact factor: 38.330

Review 10.  CRISPR-based genome editing through the lens of DNA repair.

Authors:  Tarun S Nambiar; Lou Baudrier; Pierre Billon; Alberto Ciccia
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

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