| Literature DB >> 30341251 |
Hui-Xia Wei1, Guo-Xiang Tian2, Ju-Kun Song3, Lian-Jie Yang4, Yu-Pei Wang5.
Abstract
Epidemiological studies have demonstrated close associations between SET8 rs16917496 T/C polymorphism and cancer risk, but the results of published studies were not consistent. We therefore performed this meta-analysis to explore the associations between rs16917496 T/C polymorphism and cancer risk. Five online databases were searched. Odds ratios (ORs) with a 95% confidence interval (CI) were calculated to assess the association between rs16917496 T/C polymorphism and cancer risk. In addition, heterogeneity, accumulative, sensitivity analysis, and publication bias were conducted to check the statistical power. Overall, 13 publications involving 5878 subjects were identified according to included criteria. No significant cancer risk was observed in genetic model of SET8 rs16917496 T/C polymorphism in Asian populations (C vs. T: OR = 1.04, 95%CI = 0.88-1.23, P = 0.63%; TC vs. TT: OR = 1.17, 95%CI = 0.96-1.24, P = 0.11%; CC vs. TT: OR = 0.90, 95%CI = 0.60-1.37, P = 0.63; TC+CC vs. TT: OR = 1.11, 95%CI = 0.90-1.38, P = 0.33; CC vs. TT+TC: OR = 0.92, 95%CI = 0.65-1.30, P = 0.63). Furthermore, similar associations were found in the subgroup analysis of race diversity, control design, genotyping methods, and different cancer types. In summary, our meta-analysis indicated that the SET8 rs16917496 T/C polymorphism may not play a critical role in cancer development in Asian populations.Entities:
Keywords: SET8; cancer; miR-502; polymorphism; rs16917496
Mesh:
Substances:
Year: 2018 PMID: 30341251 PMCID: PMC6239252 DOI: 10.1042/BSR20180702
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Scale for quality evaluation
| Criteria | Score |
|---|---|
| Consecutive/randomly selected cases with clearly defined sampling frame | 2 |
| Not consecutive/randomly selected case or without clearly defined sampling frame | 1 |
| Not described | 0 |
| Population- or Healthy-based | 2 |
| Hospital-based | 1 |
| Not described | 0 |
| HWE | 2 |
| Hardy–Weinberg disequilibrium | 1 |
| Not available | 0 |
| Genotyping done under ‘blinded’ condition and repeated again | 2 |
| Genotyping done under ‘blinded’ condition or repeated again | 1 |
| Unblinded done or not mentioned and unrepeated | 0 |
| Assess association between genotypes and cancer with appropriate statistics and adjustment for confounders | 2 |
| Assess association between genotypes and cancer with appropriate statistics and without adjustment for confounders | 1 |
| Inappropriate statistics used | 0 |
Figure 1Flow diagram of the study selection process
Characteristics of included studies on SET8 rs16917496 T/C polymorphism and cancer risk
| First author | Year | Country /Region | Race | Source of controls | Case | Control | Genotype distribution | Genotyping methods | MAF in control | Type | NOS | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||||||||||
| TT | TC | CC | TT | TC | CC | ||||||||||||
| Song [ | 2009 | China | East Asia | PB | 1100 | 1079 | 504 | 491 | 115 | 518 | 475 | 104 | PCR-RFLP | 0.74 | 0.31 | BC | 9 |
| Guo [ | 2012 | China | East Asia | PB | 133 | 142 | 72 | 50 | 11 | 73 | 55 | 14 | PCR-sequencing | 0.45 | 0.29 | HC | 8 |
| Wang [ | 2012 | China | East Asia | PB | 342 | 344 | 160 | 155 | 27 | 167 | 132 | 45 | PCR-sequencing | 0.02 | 0.32 | OC | 6 |
| Ding [ | 2012 | China | East Asia | PB | 44 | 42 | 22 | 14 | 8 | 24 | 12 | 6 | PCR-LDR | 0.05 | 0.29 | LC | 6 |
| Zhao [ | 2013 | China | East Asia | HB | 65 | 60 | 32 | 25 | 8 | 30 | 26 | 4 | PCR-sequencing | 0.60 | 0.28 | ESC | 7 |
| Yang [ | 2014 | China | East Asia | PB | 164 | 199 | 95 | 57 | 12 | 102 | 69 | 28 | PCR-RFLP | 0.01 | 0.31 | LC | 5 |
| Hashemi [ | 2014 | Iran | Western Asia | PB | 75 | 115 | 3 | 59 | 13 | 0 | 108 | 7 | PCR-RFLP | <0.01 | 0.53 | ALL | 7 |
| Yang [ | 2014 | China | East Asia | PB | 114 | 200 | 44 | 42 | 28 | 111 | 63 | 26 | PCR-RFLP | <0.01 | 0.29 | CC | 6 |
| Zhang [ | 2017 | China | East Asia | HB | 140 | 130 | 79 | 47 | 14 | 68 | 32 | 30 | PCR-sequencing | <0.01 | 0.35 | RCC | 6 |
| Narouie [ | 2017 | Iran | Western Asia | HB | 169 | 182 | 29 | 94 | 46 | 65 | 83 | 34 | PCR-RFLP | 0.41 | 0.41 | PC | 8 |
| Mosallayi [ | 2017 | Iran | Western Asia | HB | 170 | 170 | 58 | 80 | 32 | 69 | 71 | 30 | PCR-RFLP | 0.12 | 0.39 | CRC | 8 |
| Li [ | 2017 | China | East Asia | HB | 100 | 100 | 43 | 52 | 5 | 49 | 38 | 13 | PCR-sequencing | 0.20 | 0.32 | OC | 7 |
| Parchami Barjui [ | 2017 | Iran | Western Asia | HB | 240 | 231 | 38 | 183 | 19 | 21 | 172 | 38 | PCR-RFLP | <0.01 | 0.54 | BC | 5 |
HWE in control
Abbreviations: ALL, acute lymphoblastic leukemia; BC, breast cancer; CC, cervical cancer; CRC, colorectal cancer; ESC, esophageal cancer; HB, hospital-based; HC, hepatocellular cancer; LC, lung cancer; MAF, minor allele frequency in control group; OC, ovarian cancer; PB, population-based; PC, prostate cancer; PCR-LDR, polymerase chain reaction-ligase detection reaction; PCR-RFLP, created restriction site-restriction fragment length polymorphism; PCR-sequencing, polymerase chain reaction-sequencing; RCC, renal cell carcinoma.
Figure 2OR and 95% CIs of the associations between SET8 rs16917496 T/C polymorphism and cancer risk in TC+CC vs. TT model
Summary ORs and 95% CI of SET8 rs16917496 T/C polymorphism and cancer risk
| C vs. T | TC vs. TT | CC vs. TT | TC+CC vs. TT | CC vs. TT+TC | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR | 95% CI | OR | 95% CI | OR | 95% CI | OR | 95% CI | OR | 95% CI | ||||||||||||
| 13 | 1.04 | 0.88–1.23 | 0.63 | 72.3 | 1.17 | 0.96–1.24 | 0.11 | 50.0 | 0.90 | 0.60–1.37 | 0.63 | 76.9 | 1.11 | 0.90–1.38 | 0.33 | 64.0 | 0.92 | 0.65–1.30 | 0.63 | 73.9 | |
| Yes | 7 | 1.15 | 0.98–1.36 | 0.10 | 44.7 | 1.27 | 0.98–1.66 | 0.07 | 50.1 | 1.28 | 0.85–1.92 | 0.24 | 54.2 | 1.27 | 0.86–1.65 | 0.07 | 54.8 | 1.12 | 0.92–1.38 | 0.26 | 25.0 |
| No | 6 | 0.94 | 0.70–1.25 | 0.66 | 80.7 | 1.04 | 0.74–1.47 | 0.82 | 57.4 | 0.60 | 0.29–1.25 | 0.17 | 81.5 | 0.92 | 0.62–1.36 | 0.67 | 71.8 | 0.79 | 0.41–1.54 | 0.49 | 83.9 |
| China | 9 | 1.00 | 0.83–1.20 | 0.98 | 66.9 | 1.12 | 0.99–1.27 | 0.08 | 0 | 0.87 | 0.57–1.34 | 0.53 | 70.6 | 1.07 | 0.95–1.20 | 0.25 | 29.1 | 0.82 | 0.54–1.24 | 0.34 | 71.5 |
| Iran | 4 | 1.14 | 0.77–1.68 | 0.51 | 83.7 | 1.07 | 0.47–2.42 | 0.88 | 82.4 | 0.90 | 0.27–2.99 | 0.86 | 87.3 | 1.04 | 0.44–2.48 | 0.93 | 85.5 | 1.19 | 0.57–2.47 | 0.64 | 82.0 |
| PB | 7 | 1.06 | 0.87–1.30 | 0.56 | 68.1 | 1.09 | 0.95–1.24 | 0.22 | 20.8 | 0.97 | 0.60–1.55 | 0.89 | 68.2 | 1.08 | 0.85–1.36 | 0.52 | 52.5 | 1.08 | 0.68–1.69 | 0.75 | 72.6 |
| HB | 6 | 1.01 | 0.74–1.39 | 0.93 | 79.4 | 1.26 | 0.84–1.87 | 0.26 | 66.4 | 0.84 | 0.37–1.92 | 0.68 | 84.7 | 1.14 | 0.44–1.77 | 0.55 | 75.2 | 0.76 | 0.42–1.37 | 0.36 | 77.3 |
| Female | 5 | 1.04 | 0.81–1.33 | 0.70 | 79.6 | 1.15 | 0.88–1.49 | 0.31 | 55.9 | 0.79 | 0.41–1.55 | 0.50 | 84.7 | 1.11 | 0.83–1.48 | 0.49 | 68.6 | 0.78 | 0.44–1.37 | 0.39 | 82.3 |
| PCR-RFLP | 7 | 1.13 | 0.88–1.44 | 0.33 | 82.6 | 1.16 | 0.83–1.64 | 0.39 | 72.0 | 1.05 | 0.57–1.93 | 0.88 | 83.6 | 1.16 | 0.79–1.70 | 0.45 | 80.5 | 1.13 | 0.73–1.74 | 0.59 | 77.8 |
| PCR sequencing | 5 | 0.89 | 0.76–1.04 | 0.12 | 0 | 1.18 | 0.95–1.46 | 0.14 | 0 | 0.61 | 0.44–0.86 | 0.01 | 18.6 | 1.02 | 0.83–1.24 | 0.87 | 0 | 0.59 | 0.37–0.94 | 0.03 | 41.0 |
| DSC | 3 | 1.07 | 0.86–1.33 | 0.54 | 0 | 1.18 | 0.79–1.48 | 0.63 | 0 | 1.16 | 0.73–1.85 | 0.53 | 0.0 | 1.09 | 0.81–1.46 | 0.57 | 0 | 1.08 | 0.70–1.66 | 0.73 | 0 |
| BC | 2 | 0.90 | 0.63–1.29 | 0.57 | 84.3 | 0.84 | 0.48–1.49 | 0.56 | 73.4 | 0.59 | 0.15–2.34 | 0.45 | 91.2 | 0.80 | 0.40–1.58 | 0.52 | 81.7 | 0.72 | 0.29–1.78 | 0.48 | 87.3 |
| LC | 2 | 0.90 | 0.51–1.58 | 0.71 | 60.8 | 0.95 | 0.63–1.42 | 0.79 | 0 | 0.74 | 0.24–2.24 | 0.59 | 60.9 | 0.89 | 0.55–1.42 | 0.63 | 24.9 | 0.72 | 0.27–1.91 | 0.51 | 53.8 |
| OC | 2 | 0.93 | 0.76–1.14 | 0.48 | 0.0 | 1.29 | 0.98–1.71 | 0.07 | 0 | 0.59 | 0.37–0.94 | 0.03 | 0.0 | 1.12 | 0.86–1.45 | 0.42 | 0 | 0.52 | 0.33–0.82 | 0.01 | 0 |
Abbreviations: DSC, digestive system cancer; HB, hospital-based; LC, lung cancer; OC, ovarian cancer; PB, population-based; PCR-RFLP, created restriction site-restriction fragment length polymorphism.
Numbers of comparisons
Figure 3Cumulative meta-analyses according to publication year in TC+CC vs. TT model of SET8 rs16917496 T/C polymorphism
Figure 4Sensitivity analysis through deleting each study to reflect the influence of the individual dataset to the pooled ORs in TC+CC vs. TT model of SET8 rs16917496 T/C polymorphism
Figure 5Funnel plot analysis to detect publication bias for TC+CC vs. TT model of SET8 rs16917496 T/C polymorphism
Circles represent the weight of the studies.