Literature DB >> 30143804

Analysis of VUS reporting, variant reinterpretation and recontact policies in clinical genomic sequencing consent forms.

Danya F Vears1,2, Emilia Niemiec3,4,5,6, Heidi Carmen Howard6, Pascal Borry7,8.   

Abstract

There are several key unsolved issues relating to the clinical use of next generation sequencing, such as: should laboratories report variants of uncertain significance (VUS) to clinicians and/or patients? Should they reinterpret VUS in response to growing knowledge in the field? And should patients be recontacted regarding such results? We systematically analyzed 58 consent forms in English used in the diagnostic context to investigate their policies for (a) reporting VUS, (b) reinterpreting variants, including who should initiate this, and (c) recontacting patients and the mechanisms for undertaking any recontact. One-third (20/58) of the forms did not mention VUS in any way. Of the 38 forms that mentioned VUS, only half provided some description of what a VUS is. Approximately one-third of forms explicitly stated that reinterpretation of variants for clinical purposes may occur. Less than half mentioned recontact for clinical purposes, with variation as to whether laboratories, patients, or clinicians should initiate this. We suggest that the variability in variant reporting, reinterpretation, and recontact policies and practices revealed by our analysis may lead to diffused responsibility, which could result in missed opportunities for patients or family members to receive a diagnosis in response to updated variant classifications. Finally, we provide some suggestions for ethically appropriate inclusion of policies for reporting VUS, reinterpretation, and recontact on consent forms.

Entities:  

Mesh:

Year:  2018        PMID: 30143804      PMCID: PMC6244391          DOI: 10.1038/s41431-018-0239-7

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  28 in total

1.  A 'joint venture' model of recontacting in clinical genomics: challenges for responsible implementation.

Authors:  Sandi Dheensa; Daniele Carrieri; Susan Kelly; Angus Clarke; Shane Doheny; Peter Turnpenny; Anneke Lucassen
Journal:  Eur J Med Genet       Date:  2017-05-10       Impact factor: 2.708

2.  Experiences with obtaining informed consent for genomic sequencing.

Authors:  Barbara A Bernhardt; Myra I Roche; Denise L Perry; Sarah R Scollon; Ashley N Tomlinson; Debra Skinner
Journal:  Am J Med Genet A       Date:  2015-07-21       Impact factor: 2.802

3.  Practices and policies of clinical exome sequencing providers: analysis and implications.

Authors:  Seema M Jamal; Joon-Ho Yu; Jessica X Chong; Karin M Dent; Jessie H Conta; Holly K Tabor; Michael J Bamshad
Journal:  Am J Med Genet A       Date:  2013-05       Impact factor: 2.802

4.  Clinical whole-exome sequencing: are we there yet?

Authors:  Paldeep Singh Atwal; Marie-Louise Brennan; Rachel Cox; Michael Niaki; Julia Platt; Margaret Homeyer; Andrea Kwan; Sylvie Parkin; Susan Schelley; Leah Slattery; Yael Wilnai; Jonathan Adam Bernstein; Gregory M Enns; Louanne Hudgins
Journal:  Genet Med       Date:  2014-02-13       Impact factor: 8.822

5.  Developing a simplified consent form for biobanking.

Authors:  Laura M Beskow; Joëlle Y Friedman; N Chantelle Hardy; Li Lin; Kevin P Weinfurt
Journal:  PLoS One       Date:  2010-10-08       Impact factor: 3.240

6.  Recontact in clinical practice: a survey of clinical genetics services in the United Kingdom.

Authors:  Daniele Carrieri; Anneke M Lucassen; Angus J Clarke; Sandi Dheensa; Shane Doheny; Peter D Turnpenny; Susan E Kelly
Journal:  Genet Med       Date:  2016-02-18       Impact factor: 8.822

7.  Variation among Consent Forms for Clinical Whole Exome Sequencing.

Authors:  Sara A Fowler; Carol J Saunders; Mark A Hoffman
Journal:  J Genet Couns       Date:  2017-07-08       Impact factor: 2.537

8.  Public variant databases: liability?

Authors:  Adrian Thorogood; Robert Cook-Deegan; Bartha Maria Knoppers
Journal:  Genet Med       Date:  2016-12-15       Impact factor: 8.822

9.  Recontacting in clinical practice: an investigation of the views of healthcare professionals and clinical scientists in the United Kingdom.

Authors:  Daniele Carrieri; Sandi Dheensa; Shane Doheny; Angus J Clarke; Peter D Turnpenny; Anneke M Lucassen; Susan E Kelly
Journal:  Eur J Hum Genet       Date:  2017-01-04       Impact factor: 4.246

10.  Recontacting patients in clinical genetics services: recommendations of the European Society of Human Genetics.

Authors:  Daniele Carrieri; Heidi C Howard; Caroline Benjamin; Angus J Clarke; Sandi Dheensa; Shane Doheny; Naomi Hawkins; Tanya F Halbersma-Konings; Leigh Jackson; Hülya Kayserili; Susan E Kelly; Anneke M Lucassen; Álvaro Mendes; Emmanuelle Rial-Sebbag; Vigdís Stefánsdóttir; Peter D Turnpenny; Carla G van El; Irene M van Langen; Martina C Cornel; Francesca Forzano
Journal:  Eur J Hum Genet       Date:  2018-10-11       Impact factor: 4.246

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  22 in total

1.  Novel bioinformatics quality control metric for next-generation sequencing experiments in the clinical context.

Authors:  Maxim Ivanov; Mikhail Ivanov; Artem Kasianov; Ekaterina Rozhavskaya; Sergey Musienko; Ancha Baranova; Vladislav Mileyko
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

2.  The Responsibility to Recontact Research Participants after Reinterpretation of Genetic and Genomic Research Results.

Authors:  Yvonne Bombard; Kyle B Brothers; Sara Fitzgerald-Butt; Nanibaa' A Garrison; Leila Jamal; Cynthia A James; Gail P Jarvik; Jennifer B McCormick; Tanya N Nelson; Kelly E Ormond; Heidi L Rehm; Julie Richer; Emmanuelle Souzeau; Jason L Vassy; Jennifer K Wagner; Howard P Levy
Journal:  Am J Hum Genet       Date:  2019-04-04       Impact factor: 11.025

3.  Consent for clinical genome sequencing: considerations from the Clinical Sequencing Exploratory Research Consortium.

Authors:  Joon-Ho Yu; Paul S Appelbaum; Kyle B Brothers; Steven Joffe; Tia L Kauffman; Barbara A Koenig; Anya Er Prince; Sarah Scollon; Susan M Wolf; Barbara A Bernhardt; Benjamin S Wilfond
Journal:  Per Med       Date:  2019-07-17       Impact factor: 2.512

Review 4.  A pediatric perspective on genomics and prevention in the twenty-first century.

Authors:  Bimal P Chaudhari; Kandamurugu Manickam; Kim L McBride
Journal:  Pediatr Res       Date:  2019-10-02       Impact factor: 3.756

5.  Recontacting registry participants with genetic updates through GenomeConnect, the ClinGen patient registry.

Authors:  Juliann M Savatt; Danielle R Azzariti; David H Ledbetter; Emily Palen; Heidi L Rehm; Erin Rooney Riggs; Christa Lese Martin
Journal:  Genet Med       Date:  2021-05-18       Impact factor: 8.822

6.  Improving diagnostics of rare genetic diseases with NGS approaches.

Authors:  Mateja Vinkšel; Karin Writzl; Aleš Maver; Borut Peterlin
Journal:  J Community Genet       Date:  2021-01-15

7.  Defects in GnRH Neuron Migration/Development and Hypothalamic-Pituitary Signaling Impact Clinical Variability of Kallmann Syndrome.

Authors:  Małgorzata Kałużna; Bartłomiej Budny; Michał Rabijewski; Jarosław Kałużny; Agnieszka Dubiel; Małgorzata Trofimiuk-Müldner; Elżbieta Wrotkowska; Alicja Hubalewska-Dydejczyk; Marek Ruchała; Katarzyna Ziemnicka
Journal:  Genes (Basel)       Date:  2021-06-05       Impact factor: 4.096

8.  A Novel Splice Variant (c.438T>A) of APC, Suspected by Family History and Confirmed by RNA Sequencing.

Authors:  Heerah Lee; Hyun-Ki Kim; Dong-Hoon Yang; Yong Sang Hong; Woochang Lee; Seok-Byung Lim; Jeong-Sik Byeon; Sail Chun; Won-Ki Min
Journal:  Ann Lab Med       Date:  2020-08-25       Impact factor: 3.464

9.  Recontacting patients in clinical genetics services: recommendations of the European Society of Human Genetics.

Authors:  Daniele Carrieri; Heidi C Howard; Caroline Benjamin; Angus J Clarke; Sandi Dheensa; Shane Doheny; Naomi Hawkins; Tanya F Halbersma-Konings; Leigh Jackson; Hülya Kayserili; Susan E Kelly; Anneke M Lucassen; Álvaro Mendes; Emmanuelle Rial-Sebbag; Vigdís Stefánsdóttir; Peter D Turnpenny; Carla G van El; Irene M van Langen; Martina C Cornel; Francesca Forzano
Journal:  Eur J Hum Genet       Date:  2018-10-11       Impact factor: 4.246

10.  Old Challenges or New Issues? Genetic Health Professionals' Experiences Obtaining Informed Consent in Diagnostic Genomic Sequencing.

Authors:  Danya F Vears; Pascal Borry; Julian Savulescu; Julian J Koplin
Journal:  AJOB Empir Bioeth       Date:  2020-10-05
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