Literature DB >> 33452619

Improving diagnostics of rare genetic diseases with NGS approaches.

Mateja Vinkšel1, Karin Writzl1, Aleš Maver1, Borut Peterlin2.   

Abstract

According to a rough estimate, one in fifteen people worldwide is affected by a rare disease. Rare diseases are therefore common in clinical practice; however, timely diagnosis of rare diseases is still challenging. Introduction of novel methods based on next-generation sequencing (NGS) technology offers a successful diagnosis of genetically heterogeneous disorders, even in case of unclear clinical diagnostic hypothesis. However, the application of novel technology differs among the centres and health systems significantly. Our goal is to discuss the impact of the implementation of NGS in the diagnosis of rare diseases and present advantages along with challenges of diagnostic approach. Systematic implementation of NGS in health systems can significantly improve the access of patients with rare diseases to diagnosis and reduce the dependence of national health systems for cross-border collaboration.

Entities:  

Keywords:  Diagnostics; Healthcare system; Next generation sequencing; Rare diseases

Year:  2021        PMID: 33452619     DOI: 10.1007/s12687-020-00500-5

Source DB:  PubMed          Journal:  J Community Genet        ISSN: 1868-310X


  56 in total

1.  Increased diagnostic and new genes identification outcome using research reanalysis of singleton exome sequencing.

Authors:  Ange-Line Bruel; Sophie Nambot; Virginie Quéré; Antonio Vitobello; Julien Thevenon; Mirna Assoum; Sébastien Moutton; Nada Houcinat; Daphné Lehalle; Nolwenn Jean-Marçais; Martin Chevarin; Thibaud Jouan; Charlotte Poë; Patrick Callier; Emilie Tisserand; Christophe Philippe; Frédéric Tran Mau Them; Yannis Duffourd; Laurence Faivre; Christel Thauvin-Robinet
Journal:  Eur J Hum Genet       Date:  2019-06-23       Impact factor: 4.246

2.  Significance Testing for Allelic Heterogeneity.

Authors:  Yangqing Deng; Wei Pan
Journal:  Genetics       Date:  2018-06-29       Impact factor: 4.562

3.  Diagnostic gene sequencing panels: from design to report-a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Authors:  Lora J H Bean; Birgit Funke; Colleen M Carlston; Jennifer L Gannon; Sibel Kantarci; Bryan L Krock; Shulin Zhang; Pinar Bayrak-Toydemir
Journal:  Genet Med       Date:  2019-11-16       Impact factor: 8.822

Review 4.  Recommendations for returning genomic incidental findings? We need to talk!

Authors:  Wylie Burke; Armand H Matheny Antommaria; Robin Bennett; Jeffrey Botkin; Ellen Wright Clayton; Gail E Henderson; Ingrid A Holm; Gail P Jarvik; Muin J Khoury; Bartha Maria Knoppers; Nancy A Press; Lainie Friedman Ross; Mark A Rothstein; Howard Saal; Wendy R Uhlmann; Benjamin Wilfond; Susan M Wolf; Ron Zimmern
Journal:  Genet Med       Date:  2013-08-01       Impact factor: 8.822

5.  The clinical application of genome-wide sequencing for monogenic diseases in Canada: Position Statement of the Canadian College of Medical Geneticists.

Authors:  Kym Boycott; Taila Hartley; Shelin Adam; Francois Bernier; Karen Chong; Bridget A Fernandez; Jan M Friedman; Michael T Geraghty; Stacey Hume; Bartha M Knoppers; Anne-Marie Laberge; Jacek Majewski; Roberto Mendoza-Londono; M Stephen Meyn; Jacques L Michaud; Tanya N Nelson; Julie Richer; Bekim Sadikovic; David L Skidmore; Tracy Stockley; Sherry Taylor; Clara van Karnebeek; Ma'n H Zawati; Julie Lauzon; Christine M Armour
Journal:  J Med Genet       Date:  2015-05-07       Impact factor: 6.318

6.  Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Authors:  Mark J P Chaisson; Ashley D Sanders; Xuefang Zhao; Ankit Malhotra; David Porubsky; Tobias Rausch; Eugene J Gardner; Oscar L Rodriguez; Li Guo; Ryan L Collins; Xian Fan; Jia Wen; Robert E Handsaker; Susan Fairley; Zev N Kronenberg; Xiangmeng Kong; Fereydoun Hormozdiari; Dillon Lee; Aaron M Wenger; Alex R Hastie; Danny Antaki; Thomas Anantharaman; Peter A Audano; Harrison Brand; Stuart Cantsilieris; Han Cao; Eliza Cerveira; Chong Chen; Xintong Chen; Chen-Shan Chin; Zechen Chong; Nelson T Chuang; Christine C Lambert; Deanna M Church; Laura Clarke; Andrew Farrell; Joey Flores; Timur Galeev; David U Gorkin; Madhusudan Gujral; Victor Guryev; William Haynes Heaton; Jonas Korlach; Sushant Kumar; Jee Young Kwon; Ernest T Lam; Jong Eun Lee; Joyce Lee; Wan-Ping Lee; Sau Peng Lee; Shantao Li; Patrick Marks; Karine Viaud-Martinez; Sascha Meiers; Katherine M Munson; Fabio C P Navarro; Bradley J Nelson; Conor Nodzak; Amina Noor; Sofia Kyriazopoulou-Panagiotopoulou; Andy W C Pang; Yunjiang Qiu; Gabriel Rosanio; Mallory Ryan; Adrian Stütz; Diana C J Spierings; Alistair Ward; AnneMarie E Welch; Ming Xiao; Wei Xu; Chengsheng Zhang; Qihui Zhu; Xiangqun Zheng-Bradley; Ernesto Lowy; Sergei Yakneen; Steven McCarroll; Goo Jun; Li Ding; Chong Lek Koh; Bing Ren; Paul Flicek; Ken Chen; Mark B Gerstein; Pui-Yan Kwok; Peter M Lansdorp; Gabor T Marth; Jonathan Sebat; Xinghua Shi; Ali Bashir; Kai Ye; Scott E Devine; Michael E Talkowski; Ryan E Mills; Tobias Marschall; Jan O Korbel; Evan E Eichler; Charles Lee
Journal:  Nat Commun       Date:  2019-04-16       Impact factor: 17.694

7.  Clinical exome sequencing in 509 Middle Eastern families with suspected Mendelian diseases: The Qatari experience.

Authors:  Nader Al-Dewik; Howaida Mohd; Mariam Al-Mureikhi; Rehab Ali; Fatma Al-Mesaifri; Laila Mahmoud; Noora Shahbeck; Karen El-Akouri; Mariam Almulla; Reem Al Sulaiman; Sara Musa; Ajayeb Al-Nabet Al-Marri; Gabriele Richard; Jane Juusola; Benjamin D Solomon; Fowzan S Alkuraya; Tawfeg Ben-Omran
Journal:  Am J Med Genet A       Date:  2019-03-27       Impact factor: 2.802

8.  Comprehensive use of extended exome analysis improves diagnostic yield in rare disease: a retrospective survey in 1,059 cases.

Authors:  Gaber Bergant; Ales Maver; Luca Lovrecic; Goran Čuturilo; Alenka Hodzic; Borut Peterlin
Journal:  Genet Med       Date:  2017-09-14       Impact factor: 8.822

9.  An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:  Catherine A Brownstein; Alan H Beggs; Nils Homer; Barry Merriman; Timothy W Yu; Katherine C Flannery; Elizabeth T DeChene; Meghan C Towne; Sarah K Savage; Emily N Price; Ingrid A Holm; Lovelace J Luquette; Elaine Lyon; Joseph Majzoub; Peter Neupert; David McCallie; Peter Szolovits; Huntington F Willard; Nancy J Mendelsohn; Renee Temme; Richard S Finkel; Sabrina W Yum; Livija Medne; Shamil R Sunyaev; Ivan Adzhubey; Christopher A Cassa; Paul I W de Bakker; Hatice Duzkale; Piotr Dworzyński; William Fairbrother; Laurent Francioli; Birgit H Funke; Monica A Giovanni; Robert E Handsaker; Kasper Lage; Matthew S Lebo; Monkol Lek; Ignaty Leshchiner; Daniel G MacArthur; Heather M McLaughlin; Michael F Murray; Tune H Pers; Paz P Polak; Soumya Raychaudhuri; Heidi L Rehm; Rachel Soemedi; Nathan O Stitziel; Sara Vestecka; Jochen Supper; Claudia Gugenmus; Bernward Klocke; Alexander Hahn; Max Schubach; Mortiz Menzel; Saskia Biskup; Peter Freisinger; Mario Deng; Martin Braun; Sven Perner; Richard J H Smith; Janeen L Andorf; Jian Huang; Kelli Ryckman; Val C Sheffield; Edwin M Stone; Thomas Bair; E Ann Black-Ziegelbein; Terry A Braun; Benjamin Darbro; Adam P DeLuca; Diana L Kolbe; Todd E Scheetz; Aiden E Shearer; Rama Sompallae; Kai Wang; Alexander G Bassuk; Erik Edens; Katherine Mathews; Steven A Moore; Oleg A Shchelochkov; Pamela Trapane; Aaron Bossler; Colleen A Campbell; Jonathan W Heusel; Anne Kwitek; Tara Maga; Karin Panzer; Thomas Wassink; Douglas Van Daele; Hela Azaiez; Kevin Booth; Nic Meyer; Michael M Segal; Marc S Williams; Gerard Tromp; Peter White; Donald Corsmeier; Sara Fitzgerald-Butt; Gail Herman; Devon Lamb-Thrush; Kim L McBride; David Newsom; Christopher R Pierson; Alexander T Rakowsky; Aleš Maver; Luca Lovrečić; Anja Palandačić; Borut Peterlin; Ali Torkamani; Anna Wedell; Mikael Huss; Andrey Alexeyenko; Jessica M Lindvall; Måns Magnusson; Daniel Nilsson; Henrik Stranneheim; Fulya Taylan; Christian Gilissen; Alexander Hoischen; Bregje van Bon; Helger Yntema; Marcel Nelen; Weidong Zhang; Jason Sager; Lu Zhang; Kathryn Blair; Deniz Kural; Michael Cariaso; Greg G Lennon; Asif Javed; Saloni Agrawal; Pauline C Ng; Komal S Sandhu; Shuba Krishna; Vamsi Veeramachaneni; Ofer Isakov; Eran Halperin; Eitan Friedman; Noam Shomron; Gustavo Glusman; Jared C Roach; Juan Caballero; Hannah C Cox; Denise Mauldin; Seth A Ament; Lee Rowen; Daniel R Richards; F Anthony San Lucas; Manuel L Gonzalez-Garay; C Thomas Caskey; Yu Bai; Ying Huang; Fang Fang; Yan Zhang; Zhengyuan Wang; Jorge Barrera; Juan M Garcia-Lobo; Domingo González-Lamuño; Javier Llorca; Maria C Rodriguez; Ignacio Varela; Martin G Reese; Francisco M De La Vega; Edward Kiruluta; Michele Cargill; Reece K Hart; Jon M Sorenson; Gholson J Lyon; David A Stevenson; Bruce E Bray; Barry M Moore; Karen Eilbeck; Mark Yandell; Hongyu Zhao; Lin Hou; Xiaowei Chen; Xiting Yan; Mengjie Chen; Cong Li; Can Yang; Murat Gunel; Peining Li; Yong Kong; Austin C Alexander; Zayed I Albertyn; Kym M Boycott; Dennis E Bulman; Paul M K Gordon; A Micheil Innes; Bartha M Knoppers; Jacek Majewski; Christian R Marshall; Jillian S Parboosingh; Sarah L Sawyer; Mark E Samuels; Jeremy Schwartzentruber; Isaac S Kohane; David M Margulies
Journal:  Genome Biol       Date:  2014-03-25       Impact factor: 13.583

10.  Recommendations for reporting results of diagnostic genetic testing (biochemical, cytogenetic and molecular genetic).

Authors:  Mireille Claustres; Viktor Kožich; Els Dequeker; Brain Fowler; Jayne Y Hehir-Kwa; Konstantin Miller; Cor Oosterwijk; Borut Peterlin; Conny van Ravenswaaij-Arts; Uwe Zimmermann; Orsetta Zuffardi; Ros J Hastings; David E Barton
Journal:  Eur J Hum Genet       Date:  2013-08-14       Impact factor: 4.246

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  4 in total

1.  The diagnostic odyssey: insights from parents of children living with an undiagnosed condition.

Authors:  Alicia Bauskis; Cecily Strange; Caron Molster; Colleen Fisher
Journal:  Orphanet J Rare Dis       Date:  2022-06-18       Impact factor: 4.303

Review 2.  High-throughput sequencing technologies in the detection of livestock pathogens, diagnosis, and zoonotic surveillance.

Authors:  Godagama Gamaarachchige Dinesh Suminda; Srishti Bhandari; Yoonkyung Won; Umesh Goutam; Krishna Kanth Pulicherla; Young-Ok Son; Mrinmoy Ghosh
Journal:  Comput Struct Biotechnol J       Date:  2022-09-26       Impact factor: 6.155

3.  Whole-Genome Sequencing in Diagnostics of Selected Slovenian Undiagnosed Patients with Rare Disorders.

Authors:  Gaber Bergant; Aleš Maver; Borut Peterlin
Journal:  Life (Basel)       Date:  2021-03-05

4.  CNV Detection from Exome Sequencing Data in Routine Diagnostics of Rare Genetic Disorders: Opportunities and Limitations.

Authors:  Beryl Royer-Bertrand; Katarina Cisarova; Florence Niel-Butschi; Laureane Mittaz-Crettol; Heidi Fodstad; Andrea Superti-Furga
Journal:  Genes (Basel)       Date:  2021-09-16       Impact factor: 4.096

  4 in total

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