Literature DB >> 30122538

Evaluation of Recipients of Positive and Negative Secondary Findings Evaluations in a Hybrid CLIA-Research Sequencing Pilot.

Julie C Sapp1, Jennifer J Johnston1, Kate Driscoll1, Alexis R Heidlebaugh2, Ane Miren Sagardia2, D Nadine Dogbe2, Kendall L Umstead2, Erin Turbitt2, Ilias Alevizos3, Jeffrey Baron4, Carsten Bönnemann5, Brian Brooks6, Sandra Donkervoort5, Youn Hee Jee4, W Marston Linehan7, Francis J McMahon8, Joel Moss9, James C Mullikin10, Deborah Nielsen7, Eileen Pelayo3, Alan T Remaley11, Richard Siegel12, Helen Su13, Carlos Zarate8, Teri A Manolio14, Barbara B Biesecker2, Leslie G Biesecker15.   

Abstract

While consensus regarding the return of secondary genomic findings in the clinical setting has been reached, debate about such findings in the research setting remains. We developed a hybrid, research-clinical translational genomics process for research exome data coupled with a CLIA-validated secondary findings analysis. Eleven intramural investigators from ten institutes at the National Institutes of Health piloted this process. Nearly 1,200 individuals were sequenced and 14 secondary findings were identified in 18 participants. Positive secondary findings were returned by a genetic counselor following a standardized protocol, including referrals for specialty follow-up care for the secondary finding local to the participants. Interviews were undertaken with 13 participants 4 months after receipt of a positive report. These participants reported minimal psychologic distress within a process to assimilate their results. Of the 13, 9 reported accessing the recommended health care services. A sample of 107 participants who received a negative findings report were surveyed 4 months after receiving it. They demonstrated good understanding of the negative secondary findings result and most expressed reassurance (64%) from that report. However, a notable minority (up to 17%) expressed confusion regarding the distinction of primary from secondary findings. This pilot shows it is feasible to couple CLIA-compliant secondary findings to research sequencing with minimal harms. Participants managed the surprise of a secondary finding with most following recommended follow up, yet some with negative findings conflated secondary and primary findings. Additional work is needed to understand barriers to follow-up care and help participants distinguish secondary from primary findings. Published by Elsevier Inc.

Entities:  

Keywords:  Mendelian genetic disorders; exome sequencing; incidental findings; psychologic aspects of genetic testing; secondary findings

Mesh:

Year:  2018        PMID: 30122538      PMCID: PMC6128311          DOI: 10.1016/j.ajhg.2018.07.018

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  20 in total

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Authors:  Reed E Pyeritz
Journal:  N Engl J Med       Date:  2011-10-13       Impact factor: 91.245

2.  Mapping the Ethics of Translational Genomics: Situating Return of Results and Navigating the Research-Clinical Divide.

Authors:  Susan M Wolf; Wylie Burke; Barbara A Koenig
Journal:  J Law Med Ethics       Date:  2015       Impact factor: 1.718

3.  Association of Researcher Characteristics with Views on Return of Incidental Findings from Genomic Research.

Authors:  Julia Wynn; Josue Martinez; Jimmy Duong; Yuan Zhang; Jo Phelan; Abby Fyer; Robert Klitzman; Paul S Appelbaum; Wendy K Chung
Journal:  J Genet Couns       Date:  2015-01-17       Impact factor: 2.537

4.  Effects of informed consent for individual genome sequencing on relevant knowledge.

Authors:  K A Kaphingst; F M Facio; M-R Cheng; S Brooks; H Eidem; A Linn; B B Biesecker; L G Biesecker
Journal:  Clin Genet       Date:  2012-08-07       Impact factor: 4.438

5.  A Clinical Service to Support the Return of Secondary Genomic Findings in Human Research.

Authors:  Andrew J Darnell; Howard Austin; David A Bluemke; Richard O Cannon; Kenneth Fischbeck; William Gahl; David Goldman; Christine Grady; Mark H Greene; Steven M Holland; Sara Chandros Hull; Forbes D Porter; David Resnik; Wendy S Rubinstein; Leslie G Biesecker
Journal:  Am J Hum Genet       Date:  2016-03-03       Impact factor: 11.025

6.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

7.  Research participant interest in primary, secondary, and incidental genomic findings.

Authors:  Jennifer T Loud; Renee C Bremer; Phuong L Mai; June A Peters; Neelam Giri; Douglas R Stewart; Mark H Greene; Blanche P Alter; Sharon A Savage
Journal:  Genet Med       Date:  2016-04-21       Impact factor: 8.822

8.  Analysis of protein-coding genetic variation in 60,706 humans.

Authors:  Monkol Lek; Konrad J Karczewski; Eric V Minikel; Kaitlin E Samocha; Eric Banks; Timothy Fennell; Anne H O'Donnell-Luria; James S Ware; Andrew J Hill; Beryl B Cummings; Taru Tukiainen; Daniel P Birnbaum; Jack A Kosmicki; Laramie E Duncan; Karol Estrada; Fengmei Zhao; James Zou; Emma Pierce-Hoffman; Joanne Berghout; David N Cooper; Nicole Deflaux; Mark DePristo; Ron Do; Jason Flannick; Menachem Fromer; Laura Gauthier; Jackie Goldstein; Namrata Gupta; Daniel Howrigan; Adam Kiezun; Mitja I Kurki; Ami Levy Moonshine; Pradeep Natarajan; Lorena Orozco; Gina M Peloso; Ryan Poplin; Manuel A Rivas; Valentin Ruano-Rubio; Samuel A Rose; Douglas M Ruderfer; Khalid Shakir; Peter D Stenson; Christine Stevens; Brett P Thomas; Grace Tiao; Maria T Tusie-Luna; Ben Weisburd; Hong-Hee Won; Dongmei Yu; David M Altshuler; Diego Ardissino; Michael Boehnke; John Danesh; Stacey Donnelly; Roberto Elosua; Jose C Florez; Stacey B Gabriel; Gad Getz; Stephen J Glatt; Christina M Hultman; Sekar Kathiresan; Markku Laakso; Steven McCarroll; Mark I McCarthy; Dermot McGovern; Ruth McPherson; Benjamin M Neale; Aarno Palotie; Shaun M Purcell; Danish Saleheen; Jeremiah M Scharf; Pamela Sklar; Patrick F Sullivan; Jaakko Tuomilehto; Ming T Tsuang; Hugh C Watkins; James G Wilson; Mark J Daly; Daniel G MacArthur
Journal:  Nature       Date:  2016-08-18       Impact factor: 49.962

9.  Informed consent for return of incidental findings in genomic research.

Authors:  Paul S Appelbaum; Cameron R Waldman; Abby Fyer; Robert Klitzman; Erik Parens; Josue Martinez; W Nicholson Price; Wendy K Chung
Journal:  Genet Med       Date:  2013-10-24       Impact factor: 8.822

10.  Development and preliminary evaluation of an online educational video about whole-genome sequencing for research participants, patients, and the general public.

Authors:  Saskia C Sanderson; Sabrina A Suckiel; Micol Zweig; Erwin P Bottinger; Ethylin Wang Jabs; Lynne D Richardson
Journal:  Genet Med       Date:  2015-09-03       Impact factor: 8.822

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  15 in total

1.  A primer in genomics for social and behavioral investigators.

Authors:  Erin Turbitt; Barbara B Biesecker
Journal:  Transl Behav Med       Date:  2020-05-20       Impact factor: 3.046

2.  Establishing analytical validity of BeadChip array genotype data by comparison to whole-genome sequence and standard benchmark datasets.

Authors:  Praveen F Cherukuri; Melissa M Soe; David E Condon; Shubhi Bartaria; Kaitlynn Meis; Shaopeng Gu; Frederick G Frost; Lindsay M Fricke; Krzysztof P Lubieniecki; Joanna M Lubieniecka; Robert E Pyatt; Catherine Hajek; Cornelius F Boerkoel; Lynn Carmichael
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3.  Return of individual research results from genomic research: A systematic review of stakeholder perspectives.

Authors:  Danya F Vears; Joel T Minion; Stephanie J Roberts; James Cummings; Mavis Machirori; Mwenza Blell; Isabelle Budin-Ljøsne; Lorraine Cowley; Stephanie O M Dyke; Clara Gaff; Robert Green; Alison Hall; Amber L Johns; Bartha M Knoppers; Stephanie Mulrine; Christine Patch; Eva Winkler; Madeleine J Murtagh
Journal:  PLoS One       Date:  2021-11-08       Impact factor: 3.240

4.  Returning negative results from large-scale genomic screening: Experiences from the eMERGE III network.

Authors:  Kelsey Stuttgen Finn; John Lynch; Sharon Aufox; Sarah Bland; Wendy Chung; Colin Halverson; Scott Hebbring; Christin Hoell; Ingrid Holm; Gail Jarvik; Iftikhar Kullo; Kathleen Leppig; Melanie Myers; Cynthia Prows; Hila Milo Rasouly; Rajbir Singh; Georgia Weisner; Janet Williams; Julia Wynn; Maureen Smith; Richard Sharp
Journal:  Am J Med Genet A       Date:  2020-12-08       Impact factor: 2.578

5.  Perspectives and preferences regarding genomic secondary findings in underrepresented prenatal and pediatric populations: A mixed-methods approach.

Authors:  Shannon Rego; Hannah Hoban; Simon Outram; Astrid N Zamora; Flavia Chen; Nuriye Sahin-Hodoglugil; Beatriz Anguiano; Matthew Norstad; Tiffany Yip; Billie Lianoglou; Teresa N Sparks; Mary E Norton; Barbara A Koenig; Anne M Slavotinek; Sara L Ackerman
Journal:  Genet Med       Date:  2022-04-08       Impact factor: 8.864

6.  Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2021 update: a policy statement of the American College of Medical Genetics and Genomics (ACMG).

Authors:  David T Miller; Kristy Lee; Adam S Gordon; Laura M Amendola; Kathy Adelman; Sherri J Bale; Wendy K Chung; Michael H Gollob; Steven M Harrison; Gail E Herman; Ray E Hershberger; Teri E Klein; Kent McKelvey; C Sue Richards; Christopher N Vlangos; Douglas R Stewart; Michael S Watson; Christa Lese Martin
Journal:  Genet Med       Date:  2021-05-20       Impact factor: 8.822

7.  My Research Results: a program to facilitate return of clinically actionable genomic research findings.

Authors:  Amanda M Willis; Bronwyn Terrill; Angela Pearce; Alison McEwen; Mandy L Ballinger; Mary-Anne Young
Journal:  Eur J Hum Genet       Date:  2021-10-04       Impact factor: 4.246

Review 8.  Informed Consent in the Genomics Era.

Authors:  Shannon Rego; Megan E Grove; Mildred K Cho; Kelly E Ormond
Journal:  Cold Spring Harb Perspect Med       Date:  2020-08-03       Impact factor: 5.159

9.  Pilot Study of Return of Genetic Results to Patients in Adult Nephrology.

Authors:  Jordan G Nestor; Maddalena Marasa; Hila Milo-Rasouly; Emily E Groopman; S Ali Husain; Sumit Mohan; Hilda Fernandez; Vimla S Aggarwal; Dina F Ahram; Natalie Vena; Kelsie Bogyo; Andrew S Bomback; Jai Radhakrishnan; Gerald B Appel; Wooin Ahn; David J Cohen; Pietro A Canetta; Geoffrey K Dube; Maya K Rao; Heather K Morris; Russell J Crew; Simone Sanna-Cherchi; Krzysztof Kiryluk; Ali G Gharavi
Journal:  Clin J Am Soc Nephrol       Date:  2020-04-16       Impact factor: 10.614

10.  Clinical Utility of Next-Generation Sequencing-Based Panel Testing under the Universal Health-Care System in Japan: A Retrospective Analysis at a Single University Hospital.

Authors:  Chiaki Inagaki; Daichi Maeda; Kazue Hatake; Yuki Sato; Kae Hashimoto; Daisuke Sakai; Shinichi Yachida; Iwao Nonomura; Taroh Satoh
Journal:  Cancers (Basel)       Date:  2021-03-05       Impact factor: 6.639

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