Literature DB >> 30075052

Two-Color Valence-to-Core X-ray Emission Spectroscopy Tracks Cofactor Protonation State in a Class I Ribonucleotide Reductase.

Ryan J Martinie1, Elizabeth J Blaesi1, J Martin Bollinger2, Carsten Krebs2, Kenneth D Finkelstein3, Christopher J Pollock1,4.   

Abstract

Proton transfer reactions are of central importance to a wide variety of biochemical processes, though determining proton location and monitoring proton transfers in biological systems is often extremely challenging. Herein, we use two-color valence-to-core X-ray emission spectroscopy (VtC XES) to identify protonation events across three oxidation states of the O2 -activating, radical-initiating manganese-iron heterodinuclear cofactor in a class I-c ribonucleotide reductase. This is the first application of VtC XES to an enzyme intermediate and the first simultaneous measurement of two-color VtC spectra. In contrast to more conventional methods of assessing protonation state, VtC XES is a more direct probe applicable to a wide range of metalloenzyme systems. These data, coupled to insight provided by DFT calculations, allow the inorganic cores of the MnIV FeIV and MnIV FeIII states of the enzyme to be assigned as MnIV (μ-O)2 FeIV and MnIV (μ-O)(μ-OH)FeIII , respectively.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  X-ray emission spectroscopy; bioinorganic chemistry; metalloenzymes; two-color techniques; valence-to-core

Mesh:

Substances:

Year:  2018        PMID: 30075052      PMCID: PMC6579043          DOI: 10.1002/anie.201807366

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  28 in total

1.  Probing valence orbital composition with iron Kbeta X-ray emission spectroscopy.

Authors:  Nicole Lee; Taras Petrenko; Uwe Bergmann; Frank Neese; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

2.  Insights into the geometric and electronic structure of transition metal centers from valence-to-core X-ray emission spectroscopy.

Authors:  Christopher J Pollock; Serena DeBeer
Journal:  Acc Chem Res       Date:  2015-09-24       Impact factor: 22.384

3.  The active form of Chlamydia trachomatis ribonucleotide reductase R2 protein contains a heterodinuclear Mn(IV)/Fe(III) cluster with S = 1 ground state.

Authors:  Wei Jiang; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2007-05-27       Impact factor: 15.419

Review 4.  Radical initiation in the class I ribonucleotide reductase: long-range proton-coupled electron transfer?

Authors:  JoAnne Stubbe; Daniel G Nocera; Cyril S Yee; Michelle C Y Chang
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

5.  Bis(imino)pyridine iron dinitrogen compounds revisited: differences in electronic structure between four- and five-coordinate derivatives.

Authors:  S Chantal E Stieber; Carsten Milsmann; Jordan M Hoyt; Zoë R Turner; Kenneth D Finkelstein; Karl Wieghardt; Serena DeBeer; Paul J Chirik
Journal:  Inorg Chem       Date:  2012-03-06       Impact factor: 5.165

6.  X-ray emission spectroscopy to study ligand valence orbitals in Mn coordination complexes.

Authors:  Grigory Smolentsev; Alexander V Soldatov; Johannes Messinger; Kathrin Merz; Thomas Weyhermüller; Uwe Bergmann; Yulia Pushkar; Junko Yano; Vittal K Yachandra; Pieter Glatzel
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

Review 7.  Class I ribonucleotide reductases: metallocofactor assembly and repair in vitro and in vivo.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

8.  X-ray emission spectroscopy evidences a central carbon in the nitrogenase iron-molybdenum cofactor.

Authors:  Kyle M Lancaster; Michael Roemelt; Patrick Ettenhuber; Yilin Hu; Markus W Ribbe; Frank Neese; Uwe Bergmann; Serena DeBeer
Journal:  Science       Date:  2011-11-18       Impact factor: 47.728

9.  Manganese nitride complexes in oxidation states III, IV, and V: synthesis and electronic structure.

Authors:  Henning Kropp; Amanda E King; Marat M Khusniyarov; Frank W Heinemann; Kyle M Lancaster; Serena DeBeer; Eckhard Bill; Karsten Meyer
Journal:  J Am Chem Soc       Date:  2012-09-06       Impact factor: 15.419

10.  Geometric and electronic structure of the Mn(IV)Fe(III) cofactor in class Ic ribonucleotide reductase: correlation to the class Ia binuclear non-heme iron enzyme.

Authors:  Yeonju Kwak; Wei Jiang; Laura M K Dassama; Kiyoung Park; Caleb B Bell; Lei V Liu; Shaun D Wong; Makina Saito; Yasuhiro Kobayashi; Shinji Kitao; Makoto Seto; Yoshitaka Yoda; E Ercan Alp; Jiyong Zhao; J Martin Bollinger; Carsten Krebs; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-11-06       Impact factor: 15.419

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  3 in total

1.  Quantification of Ni-N-O Bond Angles and NO Activation by X-ray Emission Spectroscopy.

Authors:  Phan N Phu; Carlos E Gutierrez; Subrata Kundu; Dimosthenis Sokaras; Thomas Kroll; Timothy H Warren; S Chantal E Stieber
Journal:  Inorg Chem       Date:  2020-12-29       Impact factor: 5.436

2.  Calcium Valence-to-Core X-ray Emission Spectroscopy: A Sensitive Probe of Oxo Protonation in Structural Models of the Oxygen-Evolving Complex.

Authors:  Zachary Mathe; Dimitrios A Pantazis; Heui Beom Lee; Richard Gnewkow; Benjamin E Van Kuiken; Theodor Agapie; Serena DeBeer
Journal:  Inorg Chem       Date:  2019-11-19       Impact factor: 5.165

3.  A von Hamos-type hard X-ray spectrometer at the PETRA III beamline P64.

Authors:  Aleksandr Kalinko; Wolfgang A Caliebe; Roland Schoch; Matthias Bauer
Journal:  J Synchrotron Radiat       Date:  2020-01-01       Impact factor: 2.616

  3 in total

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