Literature DB >> 19663435

X-ray emission spectroscopy to study ligand valence orbitals in Mn coordination complexes.

Grigory Smolentsev1, Alexander V Soldatov, Johannes Messinger, Kathrin Merz, Thomas Weyhermüller, Uwe Bergmann, Yulia Pushkar, Junko Yano, Vittal K Yachandra, Pieter Glatzel.   

Abstract

We discuss a spectroscopic method to determine the character of chemical bonding and for the identification of <n class="Chemical">span class="Chemical">metal ligands in coordination and bioinorganic chemistry. It is based on the analysis of satellite lines in X-ray emission spn>ectra that arise from transitions between valence orbitals and the <span class="Chemical">metal ion 1s level (valence-to-core XES). The spectra, in connection with calculations based on density functional theory (DFT), provide information that is complementary to other spectroscopic techniques, in particular X-ray absorption (<span class="Chemical">XANES and EXAFS). The spectral shape is sensitive to protonation of ligands and allows ligands, which differ only slightly in atomic number (e.g., C, N, O...), to be distinguished. A theoretical discussion of the main spectral features is presented in terms of molecular orbitals for a series of Mn model systems: [Mn(H(2)O)(6)](2+), [Mn(H(2)O)(5)OH](+), and [Mn(H(2)O)(5)NH(3)](2+). An application of the method, with comparison between theory and experiment, is presented for the solvated Mn(2+) ion in water and three Mn coordination complexes, namely [LMn(acac)N(3)]BPh(4), [LMn(B(2)O(3)Ph(2))(ClO(4))], and [LMn(acac)N]BPh(4), where L represents 1,4,7-trimethyl-1,4,7-triazacyclononane, acac stands for the 2,4-pentanedionate anion, and B(2)O(3)Ph(2) represents the 1,3-diphenyl-1,3-dibora-2-oxapropane-1,3-diolato dianion.

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Year:  2009        PMID: 19663435      PMCID: PMC2752666          DOI: 10.1021/ja808526m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  High-resolution X-ray emission and X-ray absorption spectroscopy.

Authors:  F de Groot
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Geometrical fitting of experimental XANES spectra by a full multiple-scattering procedure.

Authors:  M Benfatto; S Della Longa
Journal:  J Synchrotron Radiat       Date:  2001-07-01       Impact factor: 2.616

3.  Substrate-assisted cysteine deprotonation in the mechanism of dimethylargininase (DDAH) from Pseudomonas aeruginosa.

Authors:  Everett M Stone; Alison L Costello; David L Tierney; Walter Fast
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

4.  Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1992-09-15

5.  Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster.

Authors:  Junko Yano; Jan Kern; Kenneth Sauer; Matthew J Latimer; Yulia Pushkar; Jacek Biesiadka; Bernhard Loll; Wolfram Saenger; Johannes Messinger; Athina Zouni; Vittal K Yachandra
Journal:  Science       Date:  2006-11-03       Impact factor: 47.728

6.  Quantitative local structure refinement from XANES: multi-dimensional interpolation approach.

Authors:  Grigory Smolentsev; Alexander Soldatov
Journal:  J Synchrotron Radiat       Date:  2005-12-22       Impact factor: 2.616

7.  Synthesis and Characterization of Six-Coordinate Nitrido Complexes of Vanadium(V), Chromium(V), and Manganese(V). Isolation of a Dinuclear, Mixed-Valent &mgr;-Nitrido Chromium(III)/Chromium(V) Species.

Authors:  Andrea Niemann; Ursula Bossek; Gabriele Haselhorst; Karl Wieghardt; Bernhard Nuber
Journal:  Inorg Chem       Date:  1996-02-14       Impact factor: 5.165

8.  Simulation of x-ray absorption near-edge spectra and x-ray fluorescence spectra of optically excited molecules.

Authors:  R K Pandey; Shaul Mukamel
Journal:  J Chem Phys       Date:  2006-03-07       Impact factor: 3.488

9.  Absence of Mn-centered oxidation in the S(2) --> S(3) transition: implications for the mechanism of photosynthetic water oxidation.

Authors:  J Messinger; J H Robblee; U Bergmann; C Fernandez; P Glatzel; H Visser; R M Cinco; K L McFarlane; E Bellacchio; S A Pizarro; S P Cramer; K Sauer; M P Klein; V K Yachandra
Journal:  J Am Chem Soc       Date:  2001-08-15       Impact factor: 15.419

10.  Probing mode and site of substrate water binding to the oxygen-evolving complex in the S2 state of photosystem II by 17O-HYSCORE spectroscopy.

Authors:  Ji-Hu Su; Wolfgang Lubitz; Johannes Messinger
Journal:  J Am Chem Soc       Date:  2008-01-23       Impact factor: 15.419

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  33 in total

1.  Identification of a single light atom within a multinuclear metal cluster using valence-to-core X-ray emission spectroscopy.

Authors:  Mario Ulises Delgado-Jaime; Benjamin R Dible; Karen P Chiang; William W Brennessel; Uwe Bergmann; Patrick L Holland; Serena DeBeer
Journal:  Inorg Chem       Date:  2011-09-28       Impact factor: 5.165

2.  A seven-crystal Johann-type hard x-ray spectrometer at the Stanford Synchrotron Radiation Lightsource.

Authors:  D Sokaras; T-C Weng; D Nordlund; R Alonso-Mori; P Velikov; D Wenger; A Garachtchenko; M George; V Borzenets; B Johnson; T Rabedeau; U Bergmann
Journal:  Rev Sci Instrum       Date:  2013-05       Impact factor: 1.523

3.  Two-Color Valence-to-Core X-ray Emission Spectroscopy Tracks Cofactor Protonation State in a Class I Ribonucleotide Reductase.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; J Martin Bollinger; Carsten Krebs; Kenneth D Finkelstein; Christopher J Pollock
Journal:  Angew Chem Int Ed Engl       Date:  2018-09-04       Impact factor: 15.336

4.  X-ray Absorption and Emission Study of Dioxygen Activation by a Small-Molecule Manganese Complex.

Authors:  Julian A Rees; Vlad Martin-Diaconescu; Julie A Kovacs; Serena DeBeer
Journal:  Inorg Chem       Date:  2015-06-10       Impact factor: 5.165

5.  Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode.

Authors:  Roberto Alonso-Mori; Jan Kern; Richard J Gildea; Dimosthenis Sokaras; Tsu-Chien Weng; Benedikt Lassalle-Kaiser; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Julia Hellmich; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Donald W Schafer; Jonas Sellberg; Christopher Kenney; Ryan Herbst; Jack Pines; Philip Hart; Sven Herrmann; Ralf W Grosse-Kunstleve; Matthew J Latimer; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Athina Zouni; Johannes Messinger; Pieter Glatzel; Nicholas K Sauter; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

6.  A multi-crystal wavelength dispersive x-ray spectrometer.

Authors:  Roberto Alonso-Mori; Jan Kern; Dimosthenis Sokaras; Tsu-Chien Weng; Dennis Nordlund; Rosalie Tran; Paul Montanez; James Delor; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Rev Sci Instrum       Date:  2012-07       Impact factor: 1.523

7.  Cobalt Kβ valence-to-core X-ray emission spectroscopy: a study of low-spin octahedral cobalt(iii) complexes.

Authors:  Katarina Schwalenstocker; Jaya Paudel; Alexander W Kohn; Chao Dong; Katherine M Van Heuvelen; Erik R Farquhar; Feifei Li
Journal:  Dalton Trans       Date:  2016-08-17       Impact factor: 4.390

8.  Kβ Valence to Core X-ray Emission Studies of Cu(I) Binding Proteins with Mixed Methionine - Histidine Coordination. Relevance to the Reactivity of the M- and H-sites of Peptidylglycine Monooxygenase.

Authors:  Vlad Martin-Diaconescu; Kelly N Chacón; Mario Ulises Delgado-Jaime; Dimosthenis Sokaras; Tsu-Chien Weng; Serena DeBeer; Ninian J Blackburn
Journal:  Inorg Chem       Date:  2016-03-11       Impact factor: 5.165

9.  Direct detection of oxygen ligation to the Mn(4)Ca cluster of photosystem II by X-ray emission spectroscopy.

Authors:  Yulia Pushkar; Xi Long; Pieter Glatzel; Gary W Brudvig; G Charles Dismukes; Terrence J Collins; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

10.  Sensitivity of X-ray core spectroscopy to changes in metal ligation: a systematic study of low-coordinate, high-spin ferrous complexes.

Authors:  P Chandrasekaran; Karen P Chiang; Dennis Nordlund; Uwe Bergmann; Patrick L Holland; Serena DeBeer
Journal:  Inorg Chem       Date:  2013-05-10       Impact factor: 5.165

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