Literature DB >> 19663435

X-ray emission spectroscopy to study ligand valence orbitals in Mn coordination complexes.

Grigory Smolentsev1, Alexander V Soldatov, Johannes Messinger, Kathrin Merz, Thomas Weyhermüller, Uwe Bergmann, Yulia Pushkar, Junko Yano, Vittal K Yachandra, Pieter Glatzel.   

Abstract

We discuss a spectroscopic method to determine the character of chemical bonding and for the identification of <span class="Chemical">metal ligands in coordination and bioinorganic chemistry. It is based on the analysis of satellite lines in X-ray emission class="Chemical">spectra that arise from transitions between valence orbitals and the <class="Chemical">span class="Chemical">metal ion 1s level (valence-to-core XES). The spectra, in connection with calculations based on density functional theory (DFT), provide information that is complementary to other spectroscopic techniques, in particular X-ray absorption (XANES and EXAFS). The spectral shape is sensitive to protonation of ligands and allows ligands, which differ only slightly in atomic number (e.g., C, N, O...), to be distinguished. A theoretical discussion of the main spectral features is presented in terms of molecular orbitals for a series of Mn model systems: [Mn(H(2)O)(6)](2+), [Mn(H(2)O)(5)OH](+), and [Mn(H(2)O)(5)NH(3)](2+). An application of the method, with comparison between theory and experiment, is presented for the solvated Mn(2+) ion in water and three Mn coordination complexes, namely [LMn(acac)N(3)]BPh(4), [LMn(B(2)O(3)Ph(2))(ClO(4))], and [LMn(acac)N]BPh(4), where L represents 1,4,7-trimethyl-1,4,7-triazacyclononane, acac stands for the 2,4-pentanedionate anion, and B(2)O(3)Ph(2) represents the 1,3-diphenyl-1,3-dibora-2-oxapropane-1,3-diolato dianion.

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Year:  2009        PMID: 19663435      PMCID: PMC2752666          DOI: 10.1021/ja808526m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  High-resolution X-ray emission and X-ray absorption spectroscopy.

Authors:  F de Groot
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Geometrical fitting of experimental XANES spectra by a full multiple-scattering procedure.

Authors:  M Benfatto; S Della Longa
Journal:  J Synchrotron Radiat       Date:  2001-07-01       Impact factor: 2.616

3.  Substrate-assisted cysteine deprotonation in the mechanism of dimethylargininase (DDAH) from Pseudomonas aeruginosa.

Authors:  Everett M Stone; Alison L Costello; David L Tierney; Walter Fast
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

4.  Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1992-09-15

5.  Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster.

Authors:  Junko Yano; Jan Kern; Kenneth Sauer; Matthew J Latimer; Yulia Pushkar; Jacek Biesiadka; Bernhard Loll; Wolfram Saenger; Johannes Messinger; Athina Zouni; Vittal K Yachandra
Journal:  Science       Date:  2006-11-03       Impact factor: 47.728

6.  Quantitative local structure refinement from XANES: multi-dimensional interpolation approach.

Authors:  Grigory Smolentsev; Alexander Soldatov
Journal:  J Synchrotron Radiat       Date:  2005-12-22       Impact factor: 2.616

7.  Synthesis and Characterization of Six-Coordinate Nitrido Complexes of Vanadium(V), Chromium(V), and Manganese(V). Isolation of a Dinuclear, Mixed-Valent &mgr;-Nitrido Chromium(III)/Chromium(V) Species.

Authors:  Andrea Niemann; Ursula Bossek; Gabriele Haselhorst; Karl Wieghardt; Bernhard Nuber
Journal:  Inorg Chem       Date:  1996-02-14       Impact factor: 5.165

8.  Simulation of x-ray absorption near-edge spectra and x-ray fluorescence spectra of optically excited molecules.

Authors:  R K Pandey; Shaul Mukamel
Journal:  J Chem Phys       Date:  2006-03-07       Impact factor: 3.488

9.  Absence of Mn-centered oxidation in the S(2) --> S(3) transition: implications for the mechanism of photosynthetic water oxidation.

Authors:  J Messinger; J H Robblee; U Bergmann; C Fernandez; P Glatzel; H Visser; R M Cinco; K L McFarlane; E Bellacchio; S A Pizarro; S P Cramer; K Sauer; M P Klein; V K Yachandra
Journal:  J Am Chem Soc       Date:  2001-08-15       Impact factor: 15.419

10.  Probing mode and site of substrate water binding to the oxygen-evolving complex in the S2 state of photosystem II by 17O-HYSCORE spectroscopy.

Authors:  Ji-Hu Su; Wolfgang Lubitz; Johannes Messinger
Journal:  J Am Chem Soc       Date:  2008-01-23       Impact factor: 15.419

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  33 in total

1.  Identification of a single light atom within a multinuclear metal cluster using valence-to-core X-ray emission spectroscopy.

Authors:  Mario Ulises Delgado-Jaime; Benjamin R Dible; Karen P Chiang; William W Brennessel; Uwe Bergmann; Patrick L Holland; Serena DeBeer
Journal:  Inorg Chem       Date:  2011-09-28       Impact factor: 5.165

2.  A seven-crystal Johann-type hard x-ray spectrometer at the Stanford Synchrotron Radiation Lightsource.

Authors:  D Sokaras; T-C Weng; D Nordlund; R Alonso-Mori; P Velikov; D Wenger; A Garachtchenko; M George; V Borzenets; B Johnson; T Rabedeau; U Bergmann
Journal:  Rev Sci Instrum       Date:  2013-05       Impact factor: 1.523

3.  Two-Color Valence-to-Core X-ray Emission Spectroscopy Tracks Cofactor Protonation State in a Class I Ribonucleotide Reductase.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; J Martin Bollinger; Carsten Krebs; Kenneth D Finkelstein; Christopher J Pollock
Journal:  Angew Chem Int Ed Engl       Date:  2018-09-04       Impact factor: 15.336

4.  X-ray Absorption and Emission Study of Dioxygen Activation by a Small-Molecule Manganese Complex.

Authors:  Julian A Rees; Vlad Martin-Diaconescu; Julie A Kovacs; Serena DeBeer
Journal:  Inorg Chem       Date:  2015-06-10       Impact factor: 5.165

5.  Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode.

Authors:  Roberto Alonso-Mori; Jan Kern; Richard J Gildea; Dimosthenis Sokaras; Tsu-Chien Weng; Benedikt Lassalle-Kaiser; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Julia Hellmich; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Donald W Schafer; Jonas Sellberg; Christopher Kenney; Ryan Herbst; Jack Pines; Philip Hart; Sven Herrmann; Ralf W Grosse-Kunstleve; Matthew J Latimer; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Athina Zouni; Johannes Messinger; Pieter Glatzel; Nicholas K Sauter; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

6.  A multi-crystal wavelength dispersive x-ray spectrometer.

Authors:  Roberto Alonso-Mori; Jan Kern; Dimosthenis Sokaras; Tsu-Chien Weng; Dennis Nordlund; Rosalie Tran; Paul Montanez; James Delor; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Rev Sci Instrum       Date:  2012-07       Impact factor: 1.523

7.  Cobalt Kβ valence-to-core X-ray emission spectroscopy: a study of low-spin octahedral cobalt(iii) complexes.

Authors:  Katarina Schwalenstocker; Jaya Paudel; Alexander W Kohn; Chao Dong; Katherine M Van Heuvelen; Erik R Farquhar; Feifei Li
Journal:  Dalton Trans       Date:  2016-08-17       Impact factor: 4.390

8.  Kβ Valence to Core X-ray Emission Studies of Cu(I) Binding Proteins with Mixed Methionine - Histidine Coordination. Relevance to the Reactivity of the M- and H-sites of Peptidylglycine Monooxygenase.

Authors:  Vlad Martin-Diaconescu; Kelly N Chacón; Mario Ulises Delgado-Jaime; Dimosthenis Sokaras; Tsu-Chien Weng; Serena DeBeer; Ninian J Blackburn
Journal:  Inorg Chem       Date:  2016-03-11       Impact factor: 5.165

9.  Direct detection of oxygen ligation to the Mn(4)Ca cluster of photosystem II by X-ray emission spectroscopy.

Authors:  Yulia Pushkar; Xi Long; Pieter Glatzel; Gary W Brudvig; G Charles Dismukes; Terrence J Collins; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

10.  Sensitivity of X-ray core spectroscopy to changes in metal ligation: a systematic study of low-coordinate, high-spin ferrous complexes.

Authors:  P Chandrasekaran; Karen P Chiang; Dennis Nordlund; Uwe Bergmann; Patrick L Holland; Serena DeBeer
Journal:  Inorg Chem       Date:  2013-05-10       Impact factor: 5.165

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