Literature DB >> 22096198

X-ray emission spectroscopy evidences a central carbon in the nitrogenase iron-molybdenum cofactor.

Kyle M Lancaster1, Michael Roemelt, Patrick Ettenhuber, Yilin Hu, Markus W Ribbe, Frank Neese, Uwe Bergmann, Serena DeBeer.   

Abstract

Nitrogenase is a complex enzyme that catalyzes the reduction of dinitrogen to ammonia. Despite insight from structural and biochemical studies, its structure and mechanism await full characterization. An iron-molybdenum cofactor (FeMoco) is thought to be the site of dinitrogen reduction, but the identity of a central atom in this cofactor remains unknown. Fe Kβ x-ray emission spectroscopy (XES) of intact nitrogenase MoFe protein, isolated FeMoco, and the FeMoco-deficient nifB protein indicates that among the candidate atoms oxygen, nitrogen, and carbon, it is carbon that best fits the XES data. The experimental XES is supported by computational efforts, which show that oxidation and spin states do not affect the assignment of the central atom to C(4-). Identification of the central atom will drive further studies on its role in catalysis.

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Year:  2011        PMID: 22096198      PMCID: PMC3800678          DOI: 10.1126/science.1206445

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  23 in total

1.  Structure of a cofactor-deficient nitrogenase MoFe protein.

Authors:  Benedikt Schmid; Markus W Ribbe; Oliver Einsle; Mika Yoshida; Leonard M Thomas; Dennis R Dean; Douglas C Rees; Barbara K Burgess
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

2.  Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor.

Authors:  Oliver Einsle; F Akif Tezcan; Susana L A Andrade; Benedikt Schmid; Mika Yoshida; James B Howard; Douglas C Rees
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

3.  Semiempirical GGA-type density functional constructed with a long-range dispersion correction.

Authors:  Stefan Grimme
Journal:  J Comput Chem       Date:  2006-11-30       Impact factor: 3.376

4.  Synthetic analogs of the active sites of iron-sulfur proteins. II. Synthesis and structure of the tetra(mercapto-m 3 -sulfido-iron) clusters, (Fe 4 S 4 (SR) 4 ) 2- .

Authors:  B A Averill; T Herskovitz; R H Holm; J A Ibers
Journal:  J Am Chem Soc       Date:  1973-05-30       Impact factor: 15.419

5.  X-ray emission spectroscopy to study ligand valence orbitals in Mn coordination complexes.

Authors:  Grigory Smolentsev; Alexander V Soldatov; Johannes Messinger; Kathrin Merz; Thomas Weyhermüller; Uwe Bergmann; Yulia Pushkar; Junko Yano; Vittal K Yachandra; Pieter Glatzel
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

6.  Trapping an intermediate of dinitrogen (N2) reduction on nitrogenase.

Authors:  Brett M Barney; Dmitriy Lukoyanov; Robert Y Igarashi; Mikhail Laryukhin; Tran-Chin Yang; Dennis R Dean; Brian M Hoffman; Lance C Seefeldt
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

7.  The FeMoco-deficient MoFe protein produced by a nifH deletion strain of Azotobacter vinelandii shows unusual P-cluster features.

Authors:  Markus W Ribbe; Yilin Hu; Maolin Guo; Benedikt Schmid; Barbara K Burgess
Journal:  J Biol Chem       Date:  2002-04-26       Impact factor: 5.157

8.  Incorporation of iron and sulfur from NifB cofactor into the iron-molybdenum cofactor of dinitrogenase.

Authors:  R M Allen; R Chatterjee; P W Ludden; V K Shah
Journal:  J Biol Chem       Date:  1995-11-10       Impact factor: 5.157

9.  Testing if the interstitial atom, X, of the nitrogenase molybdenum-iron cofactor is N or C: ENDOR, ESEEM, and DFT studies of the S = 3/2 resting state in multiple environments.

Authors:  Dmitriy Lukoyanov; Vladimir Pelmenschikov; Nathan Maeser; Mikhail Laryukhin; Tran Chin Yang; Louis Noodleman; Dennis R Dean; David A Case; Lance C Seefeldt; Brian M Hoffman
Journal:  Inorg Chem       Date:  2007-11-21       Impact factor: 5.165

10.  Decoding the nitrogenase mechanism: the homologue approach.

Authors:  Yilin Hu; Markus W Ribbe
Journal:  Acc Chem Res       Date:  2010-03-16       Impact factor: 22.384

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  169 in total

1.  Uncoupling binding of substrate CO from turnover by vanadium nitrogenase.

Authors:  Chi Chung Lee; Aaron W Fay; Tsu-Chien Weng; Courtney M Krest; Britt Hedman; Keith O Hodgson; Yilin Hu; Markus W Ribbe
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-29       Impact factor: 11.205

2.  Identification and characterization of functional homologs of nitrogenase cofactor biosynthesis protein NifB from methanogens.

Authors:  Aaron W Fay; Jared A Wiig; Chi Chung Lee; Yilin Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

3.  Identification of an intermediate methyl carrier in the radical S-adenosylmethionine methylthiotransferases RimO and MiaB.

Authors:  Bradley J Landgraf; Arthur J Arcinas; Kyung-Hoon Lee; Squire J Booker
Journal:  J Am Chem Soc       Date:  2013-10-03       Impact factor: 15.419

Review 4.  Catalytic N2-to-NH3 (or -N2H4) Conversion by Well-Defined Molecular Coordination Complexes.

Authors:  Matthew J Chalkley; Marcus W Drover; Jonas C Peters
Journal:  Chem Rev       Date:  2020-04-30       Impact factor: 60.622

5.  Catalytic reduction of N2 to NH3 by an Fe-N2 complex featuring a C-atom anchor.

Authors:  Sidney E Creutz; Jonas C Peters
Journal:  J Am Chem Soc       Date:  2014-01-09       Impact factor: 15.419

Review 6.  Nitrogenase and homologs.

Authors:  Yilin Hu; Markus W Ribbe
Journal:  J Biol Inorg Chem       Date:  2014-12-10       Impact factor: 3.358

7.  Fe-N2/CO complexes that model a possible role for the interstitial C atom of FeMo-cofactor (FeMoco).

Authors:  Jonathan Rittle; Jonas C Peters
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

8.  Dinitrogen binding and activation at a molybdenum-iron-sulfur cluster.

Authors:  Alex McSkimming; Daniel L M Suess
Journal:  Nat Chem       Date:  2021-05-27       Impact factor: 24.427

9.  Docking and migration of carbon monoxide in nitrogenase: the case for gated pockets from infrared spectroscopy and molecular dynamics.

Authors:  Leland B Gee; Igor Leontyev; Alexei Stuchebrukhov; Aubrey D Scott; Vladimir Pelmenschikov; Stephen P Cramer
Journal:  Biochemistry       Date:  2015-05-15       Impact factor: 3.162

10.  Assignment of protonated R-homocitrate in extracted FeMo-cofactor of nitrogenase via vibrational circular dichroism spectroscopies.

Authors:  Lan Deng; Hongxin Wang; Christie H Dapper; William E Newton; Sergey Shilov; Shunlin Wang; Stephen P Cramer; Zhao-Hui Zhou
Journal:  Commun Chem       Date:  2020-10-28
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