Literature DB >> 28657738

Genetic Code Expansion in Zebrafish Embryos and Its Application to Optical Control of Cell Signaling.

Jihe Liu1, James Hemphill1, Subhas Samanta1, Michael Tsang2, Alexander Deiters1.   

Abstract

Site-specific incorporation of unnatural amino acids into proteins provides a powerful tool to study protein function. Here we report genetic code expansion in zebrafish embryos and its application to the optogenetic control of cell signaling. We genetically encoded four unnatural amino acids with a diverse set of functional groups, which included a photocaged lysine that was applied to the light-activation of luciferase and kinase activity. This approach enables versatile manipulation of protein function in live zebrafish embryos, a transparent and commonly used model organism to study embryonic development.

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Year:  2017        PMID: 28657738      PMCID: PMC6022368          DOI: 10.1021/jacs.7b02145

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  46 in total

1.  Optical Control of CRISPR/Cas9 Gene Editing.

Authors:  James Hemphill; Erin K Borchardt; Kalyn Brown; Aravind Asokan; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2015-04-23       Impact factor: 15.419

Review 2.  Pyrrolysyl-tRNA synthetase: an ordinary enzyme but an outstanding genetic code expansion tool.

Authors:  Wei Wan; Jeffery M Tharp; Wenshe R Liu
Journal:  Biochim Biophys Acta       Date:  2014-03-12

Review 3.  Optical control of protein function through unnatural amino acid mutagenesis and other optogenetic approaches.

Authors:  Austin S Baker; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2014-05-21       Impact factor: 5.100

4.  Fgf signaling negatively regulates Nodal-dependent endoderm induction in zebrafish.

Authors:  Takamasa Mizoguchi; Toshiaki Izawa; Atsushi Kuroiwa; Yutaka Kikuchi
Journal:  Dev Biol       Date:  2006-09-09       Impact factor: 3.582

5.  Sequential gene silencing using wavelength-selective caged morpholino oligonucleotides.

Authors:  Sayumi Yamazoe; Qingyang Liu; Lindsey E McQuade; Alexander Deiters; James K Chen
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-01       Impact factor: 15.336

6.  Transient expression of apoaequorin in zebrafish embryos: extending the ability to image calcium transients during later stages of development.

Authors:  Chris Y Cheung; Sarah E Webb; Anming Meng; Andrew L Miller
Journal:  Int J Dev Biol       Date:  2006       Impact factor: 2.203

Review 7.  Zebrafish as a model vertebrate for investigating chemical toxicity.

Authors:  Adrian J Hill; Hiroki Teraoka; Warren Heideman; Richard E Peterson
Journal:  Toxicol Sci       Date:  2005-02-09       Impact factor: 4.849

Review 8.  Adult zebrafish as a model organism for behavioural genetics.

Authors:  William Norton; Laure Bally-Cuif
Journal:  BMC Neurosci       Date:  2010-08-02       Impact factor: 3.288

9.  Expanding the genetic code of an animal.

Authors:  Sebastian Greiss; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-08-22       Impact factor: 15.419

10.  Genetically encoded optochemical probes for simultaneous fluorescence reporting and light activation of protein function with two-photon excitation.

Authors:  Ji Luo; Rajendra Uprety; Yuta Naro; Chungjung Chou; Duy P Nguyen; Jason W Chin; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2014-10-23       Impact factor: 15.419

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  26 in total

Review 1.  Development of photolabile protecting groups and their application to the optochemical control of cell signaling.

Authors:  Anirban Bardhan; Alexander Deiters
Journal:  Curr Opin Struct Biol       Date:  2019-05-25       Impact factor: 6.809

2.  Cell-Lineage Tracing in Zebrafish Embryos with an Expanded Genetic Code.

Authors:  Wes Brown; Jihe Liu; Michael Tsang; Alexander Deiters
Journal:  Chembiochem       Date:  2018-05-18       Impact factor: 3.164

3.  Visible-to-NIR-Light Activated Release: From Small Molecules to Nanomaterials.

Authors:  Roy Weinstain; Tomáš Slanina; Dnyaneshwar Kand; Petr Klán
Journal:  Chem Rev       Date:  2020-10-30       Impact factor: 60.622

Review 4.  Recent advances in the optical control of protein function through genetic code expansion.

Authors:  Taylor Courtney; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2018-07-26       Impact factor: 8.822

Review 5.  Genetic Code Expansion in Animals.

Authors:  Wes Brown; Jihe Liu; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2018-09-05       Impact factor: 5.100

6.  Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.

Authors:  Wes Brown; Alexander Deiters
Journal:  Methods Enzymol       Date:  2019-04-30       Impact factor: 1.600

Review 7.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

8.  Creation of Bacterial cells with 5-Hydroxytryptophan as a 21st Amino Acid Building Block.

Authors:  Yuda Chen; Juan Tang; Lushun Wang; Zeru Tian; Adam Cardenas; Xinlei Fang; Abhishek Chatterjee; Han Xiao
Journal:  Chem       Date:  2020-08-12       Impact factor: 22.804

9.  Optical control of MAP kinase kinase 6 (MKK6) reveals that it has divergent roles in pro-apoptotic and anti-proliferative signaling.

Authors:  Shah Md Toufiqur Rahman; Wenyuan Zhou; Alexander Deiters; Jason M Haugh
Journal:  J Biol Chem       Date:  2020-05-05       Impact factor: 5.157

10.  Genetic code expansion in mammalian cells: A plasmid system comparison.

Authors:  Wenyuan Zhou; Joshua S Wesalo; Jihe Liu; Alexander Deiters
Journal:  Bioorg Med Chem       Date:  2020-09-19       Impact factor: 3.641

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