Literature DB >> 29913065

OptoBase: A Web Platform for Molecular Optogenetics.

Katja Kolar1,2, Christian Knobloch3, Hendrik Stork1, Matej Žnidarič4, Wilfried Weber1,2.   

Abstract

OptoBase is an online platform for molecular optogenetics. At its core is a hand-annotated and ontology-supported database that aims to cover all existing optogenetic switches and publications, which is further complemented with a collection of convenient optogenetics-related web tools. OptoBase is meant both for expert optogeneticists to easily keep track of the field, as well as for all researchers who find optogenetics inviting as a powerful tool to address their biological questions of interest. It is available at https://www.optobase.org . This work also presents OptoBase-based analysis of the trends in molecular optogenetics.

Keywords:  database; optogenetic tools; optogenetics; photoreceptors; protein switches; synthetic biology

Mesh：

Year:  2018        PMID： 29913065     DOI： 10.1021/acssynbio.8b00120

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN： 2161-5063            Impact factor:   5.110


  27 in total

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2.  Reverse and Forward Engineering Multicellular Structures with Optogenetics.

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3.  Synthetic Biology-Empowered Hydrogels for Medical Diagnostics.

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Review 5.  Blue-Light Receptors for Optogenetics.

Authors:  Aba Losi; Kevin H Gardner; Andreas Möglich
Journal:  Chem Rev       Date:  2018-07-09       Impact factor: 60.622

6.  Shining light on molecular communication.

Authors:  Bhuvana Krishnaswamy; Megan N McClean
Journal:  ACM Int Conf Nanoscale Comput Commun (2020)       Date:  2020-10-07

7.  Biological signal generators: integrating synthetic biology tools and in silico control.

Authors:  Taylor D Scott; Kieran Sweeney; Megan N McClean
Journal:  Curr Opin Syst Biol       Date:  2019-02-27

Review 8.  Steering Molecular Activity with Optogenetics: Recent Advances and Perspectives.

Authors:  Teak-Jung Oh; Huaxun Fan; Savanna S Skeeters; Kai Zhang
Journal:  Adv Biol (Weinh)       Date:  2021-01-14

9.  Light-Inducible Recombinases for Bacterial Optogenetics.

Authors:  Michael B Sheets; Wilson W Wong; Mary J Dunlop
Journal:  ACS Synth Biol       Date:  2020-01-21       Impact factor: 5.110

Review 10.  Optogenetic Approaches for the Spatiotemporal Control of Signal Transduction Pathways.

Authors:  Markus M Kramer; Levin Lataster; Wilfried Weber; Gerald Radziwill
Journal:  Int J Mol Sci       Date:  2021-05-18       Impact factor: 5.923
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