Literature DB >> 30692218

Synthetic Switches and Regulatory Circuits in Plants.

Jennifer Andres1, Tim Blomeier1, Matias D Zurbriggen2.   

Abstract

Synthetic biology is an established but ever-growing interdisciplinary field of research currently revolutionizing biomedicine studies and the biotech industry. The engineering of synthetic circuitry in bacterial, yeast, and animal systems prompted considerable advances for the understanding and manipulation of genetic and metabolic networks; however, their implementation in the plant field lags behind. Here, we review theoretical-experimental approaches to the engineering of synthetic chemical- and light-regulated (optogenetic) switches for the targeted interrogation and control of cellular processes, including existing applications in the plant field. We highlight the strategies for the modular assembly of genetic parts into synthetic circuits of different complexity, ranging from Boolean logic gates and oscillatory devices up to semi- and fully synthetic open- and closed-loop molecular and cellular circuits. Finally, we explore potential applications of these approaches for the engineering of novel functionalities in plants, including understanding complex signaling networks, improving crop productivity, and the production of biopharmaceuticals.
© 2019 American Society of Plant Biologists. All Rights Reserved.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 30692218      PMCID: PMC6393786          DOI: 10.1104/pp.18.01362

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  167 in total

1.  Highly specific gene silencing by artificial microRNAs in Arabidopsis.

Authors:  Rebecca Schwab; Stephan Ossowski; Markus Riester; Norman Warthmann; Detlef Weigel
Journal:  Plant Cell       Date:  2006-03-10       Impact factor: 11.277

Review 2.  Designing cell function: assembly of synthetic gene circuits for cell biology applications.

Authors:  Mingqi Xie; Martin Fussenegger
Journal:  Nat Rev Mol Cell Biol       Date:  2018-08       Impact factor: 94.444

3.  RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors.

Authors:  Agnieszka Piatek; Zahir Ali; Hatoon Baazim; Lixin Li; Aala Abulfaraj; Sahar Al-Shareef; Mustapha Aouida; Magdy M Mahfouz
Journal:  Plant Biotechnol J       Date:  2014-11-14       Impact factor: 9.803

Review 4.  DNA assembly for plant biology: techniques and tools.

Authors:  Nicola J Patron
Journal:  Curr Opin Plant Biol       Date:  2014-03-12       Impact factor: 7.834

5.  Novel pristinamycin-responsive expression systems for plant cells.

Authors:  A D Frey; M Rimann; J E Bailey; P T Kallio; C J Thompson; M Fussenegger
Journal:  Biotechnol Bioeng       Date:  2001-07-20       Impact factor: 4.530

6.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

Review 7.  Synthetic strategies for plant signalling studies: molecular toolbox and orthogonal platforms.

Authors:  Justine Braguy; Matias D Zurbriggen
Journal:  Plant J       Date:  2016-07       Impact factor: 6.417

8.  A sensing array of radically coupled genetic 'biopixels'.

Authors:  Arthur Prindle; Phillip Samayoa; Ivan Razinkov; Tal Danino; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2011-12-18       Impact factor: 49.962

9.  Self-adjusting synthetic gene circuit for correcting insulin resistance.

Authors:  Haifeng Ye; Mingqi Xie; Shuai Xue; Ghislaine Charpin-El Hamri; Jianli Yin; Henryk Zulewski; Martin Fussenegger
Journal:  Nat Biomed Eng       Date:  2016-12-19       Impact factor: 25.671

10.  A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells.

Authors:  Konrad Müller; Raphael Engesser; Stéphanie Metzger; Simon Schulz; Michael M Kämpf; Moritz Busacker; Thorsten Steinberg; Pascal Tomakidi; Martin Ehrbar; Ferenc Nagy; Jens Timmer; Matias D Zubriggen; Wilfried Weber
Journal:  Nucleic Acids Res       Date:  2013-01-25       Impact factor: 16.971

View more
  15 in total

1.  Focus Issue Editorial: Synthetic Biology.

Authors:  Andrew D Hanson; Julian M Hibberd; Mattheos A G Koffas; Joachim Kopka; Eleanore T Wurtzel
Journal:  Plant Physiol       Date:  2019-03       Impact factor: 8.340

2.  Editorial: Systems Biology and Synthetic Biology in Relation to Drought Tolerance or Avoidance in Plants.

Authors:  Xiaohan Yang; John C Cushman; Anne M Borland; Qingchang Liu
Journal:  Front Plant Sci       Date:  2020-04-09       Impact factor: 5.753

Review 3.  Sensing the future of bio-informational engineering.

Authors:  Thomas A Dixon; Thomas C Williams; Isak S Pretorius
Journal:  Nat Commun       Date:  2021-01-15       Impact factor: 14.919

Review 4.  Synthetic Biology: Emerging Concepts to Design and Advance Adeno-Associated Viral Vectors for Gene Therapy.

Authors:  Hanna J Wagner; Wilfried Weber; Martin Fussenegger
Journal:  Adv Sci (Weinh)       Date:  2021-02-26       Impact factor: 16.806

Review 5.  Plant cell cultures as heterologous bio-factories for secondary metabolite production.

Authors:  Tong Wu; Sandra M Kerbler; Alisdair R Fernie; Youjun Zhang
Journal:  Plant Commun       Date:  2021-08-23

6.  A memory switch for plant synthetic biology based on the phage ϕC31 integration system.

Authors:  Joan Miquel Bernabé-Orts; Alfredo Quijano-Rubio; Marta Vazquez-Vilar; Javier Mancheño-Bonillo; Victor Moles-Casas; Sara Selma; Silvia Gianoglio; Antonio Granell; Diego Orzaez
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

Review 7.  Synthetic biology of hypoxia.

Authors:  Francesco Licausi; Beatrice Giuntoli
Journal:  New Phytol       Date:  2020-04-01       Impact factor: 10.151

8.  Rational design of minimal synthetic promoters for plants.

Authors:  Yao-Min Cai; Kalyani Kallam; Henry Tidd; Giovanni Gendarini; Amanda Salzman; Nicola J Patron
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

9.  Crops for Carbon Farming.

Authors:  Christer Jansson; Celia Faiola; Astrid Wingler; Xin-Guang Zhu; Alexandra Kravchenko; Marie-Anne de Graaff; Aaron J Ogden; Pubudu P Handakumbura; Christiane Werner; Diane M Beckles
Journal:  Front Plant Sci       Date:  2021-06-04       Impact factor: 5.753

Review 10.  Beyond natural: synthetic expansions of botanical form and function.

Authors:  Nicola J Patron
Journal:  New Phytol       Date:  2020-04-23       Impact factor: 10.323

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.