Literature DB >> 33398816

Visualization and Manipulation of Intracellular Signaling.

Yuhei Goto1,2,3, Yohei Kondo1,2,3, Kazuhiro Aoki4,5,6.   

Abstract

Cells respond to a wide range of extracellular stimuli, and process the input information through an intracellular signaling system comprised of biochemical and biophysical reactions, including enzymatic and protein-protein interactions. It is essential to understand the molecular mechanisms underlying intracellular signal transduction in order to clarify not only physiological cellular functions but also pathological processes such as tumorigenesis. Fluorescent proteins have revolutionized the field of life science, and brought the study of intracellular signaling to the single-cell and subcellular levels. Much effort has been devoted to developing genetically encoded fluorescent biosensors based on fluorescent proteins, which enable us to visualize the spatiotemporal dynamics of cell signaling. In addition, optogenetic techniques for controlling intracellular signal transduction systems have been developed and applied in recent years by regulating intracellular signaling in a light-dependent manner. Here, we outline the principles of biosensors for probing intracellular signaling and the optogenetic tools for manipulating them.

Keywords:  Cryptochrome; ERK; FRET; Optogenetics; Phytochrome

Year:  2021        PMID: 33398816     DOI: 10.1007/978-981-15-8763-4_13

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  49 in total

Review 1.  Stable expression of FRET biosensors: a new light in cancer research.

Authors:  Kazuhiro Aoki; Naoki Komatsu; Eishu Hirata; Yuji Kamioka; Michiyuki Matsuda
Journal:  Cancer Sci       Date:  2012-02-03       Impact factor: 6.716

2.  Millisecond-timescale, genetically targeted optical control of neural activity.

Authors:  Edward S Boyden; Feng Zhang; Ernst Bamberg; Georg Nagel; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2005-08-14       Impact factor: 24.884

3.  Dynamics of the Ras/ERK MAPK cascade as monitored by fluorescent probes.

Authors:  Aki Fujioka; Kenta Terai; Reina E Itoh; Kazuhiro Aoki; Takeshi Nakamura; Shinya Kuroda; Eisuke Nishida; Michiyuki Matsuda
Journal:  J Biol Chem       Date:  2006-01-17       Impact factor: 5.157

4.  Visualization of small GTPase activity with fluorescence resonance energy transfer-based biosensors.

Authors:  Kazuhiro Aoki; Michiyuki Matsuda
Journal:  Nat Protoc       Date:  2009-10-15       Impact factor: 13.491

5.  Propagating Wave of ERK Activation Orients Collective Cell Migration.

Authors:  Kazuhiro Aoki; Yohei Kondo; Honda Naoki; Toru Hiratsuka; Reina E Itoh; Michiyuki Matsuda
Journal:  Dev Cell       Date:  2017-11-06       Impact factor: 12.270

Review 6.  A bright future: optogenetics to dissect the spatiotemporal control of cell behavior.

Authors:  Alexander G Goglia; Jared E Toettcher
Journal:  Curr Opin Chem Biol       Date:  2018-12-05       Impact factor: 8.822

7.  Frequency-modulated pulses of ERK activity transmit quantitative proliferation signals.

Authors:  John G Albeck; Gordon B Mills; Joan S Brugge
Journal:  Mol Cell       Date:  2012-12-06       Impact factor: 17.970

8.  Stochastic ERK activation induced by noise and cell-to-cell propagation regulates cell density-dependent proliferation.

Authors:  Kazuhiro Aoki; Yuka Kumagai; Atsuro Sakurai; Naoki Komatsu; Yoshihisa Fujita; Clara Shionyu; Michiyuki Matsuda
Journal:  Mol Cell       Date:  2013-10-17       Impact factor: 17.970

9.  Understanding CRY2 interactions for optical control of intracellular signaling.

Authors:  Liting Duan; Jen Hope; Qunxiang Ong; Hsin-Ya Lou; Namdoo Kim; Comfrey McCarthy; Victor Acero; Michael Z Lin; Bianxiao Cui
Journal:  Nat Commun       Date:  2017-09-15       Impact factor: 14.919

10.  Optogenetic Control of Gene Expression in Drosophila.

Authors:  Yick-Bun Chan; Olga V Alekseyenko; Edward A Kravitz
Journal:  PLoS One       Date:  2015-09-18       Impact factor: 3.240

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  1 in total

Review 1.  Deciphering Molecular Mechanisms and Intervening in Physiological and Pathophysiological Processes of Ca2+ Signaling Mechanisms Using Optogenetic Tools.

Authors:  Lena Maltan; Hadil Najjar; Adéla Tiffner; Isabella Derler
Journal:  Cells       Date:  2021-11-28       Impact factor: 6.600

  1 in total

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