Literature DB >> 35425948

Shining light on molecular communication.

Bhuvana Krishnaswamy1, Megan N McClean1.   

Abstract

Molecules and combinations of molecules are the natural communication currency of microbes; microbes have evolved and been engineered to sense a variety of compounds, often with exquisite sensitivity. The availability of microbial biosensors, combined with the ability to genetically engineer biological circuits to process information, make microbes attractive bionanomachines for propagating information through molecular communication (MC) networks. However, MC networks built entirely of biological components suffer a number of limitations. They are extremely slow due to processing and propagation delays and must employ simple algorithms due to the still limited computational capabilities of biological circuits. In this work, we propose a hybrid bio-electronic framework which utilizes biological components for sensing but offloads processing and computation to traditional electronic systems and communication infrastructure. This is achieved by using tools from the burgeoning field of optogenetics to trigger biosensing through an optoelectronic interface, alleviating the need for computation and communication in the biological domain.

Entities:  

Keywords:  Bio-electronic framework; Biological nanomachines; Hardware → Bio-embedded electronics;; Molecular communication; Networks → Network protocol design; Optogenetics

Year:  2020        PMID: 35425948      PMCID: PMC9006593          DOI: 10.1145/3411295.3411307

Source DB:  PubMed          Journal:  ACM Int Conf Nanoscale Comput Commun (2020)


  49 in total

Review 1.  Where microbiology meets microengineering: design and applications of reporter bacteria.

Authors:  Jan Roelof van der Meer; Shimshon Belkin
Journal:  Nat Rev Microbiol       Date:  2010-07       Impact factor: 60.633

Review 2.  Yeast-based biosensors: design and applications.

Authors:  Adebola Adeniran; Michael Sherer; Keith E J Tyo
Journal:  FEMS Yeast Res       Date:  2015-01-14       Impact factor: 2.796

3.  Advances in bacterial cancer therapies using synthetic biology.

Authors:  Tiffany Chien; Anjali Doshi; Tal Danino
Journal:  Curr Opin Syst Biol       Date:  2017-05-23

4.  High-throughput multicolor optogenetics in microwell plates.

Authors:  Lukasz J Bugaj; Wendell A Lim
Journal:  Nat Protoc       Date:  2019-06-24       Impact factor: 13.491

5.  The human oestrogen receptor functions in yeast.

Authors:  D Metzger; J H White; P Chambon
Journal:  Nature       Date:  1988-07-07       Impact factor: 49.962

Review 6.  At Light Speed: Advances in Optogenetic Systems for Regulating Cell Signaling and Behavior.

Authors:  Nicole A Repina; Alyssa Rosenbloom; Abhirup Mukherjee; David V Schaffer; Ravi S Kane
Journal:  Annu Rev Chem Biomol Eng       Date:  2017-06-07       Impact factor: 11.059

7.  High-Throughput Analysis of Endocrine-Disrupting Compounds Using BLYES and BLYAS Bioluminescent Yeast Bioassays.

Authors:  Tingting Xu; Anna Young; Jasleen Narula; Gary Sayler; Steven Ripp
Journal:  Methods Mol Biol       Date:  2020

Review 8.  Synthetic biology: applications come of age.

Authors:  Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2010-05       Impact factor: 53.242

9.  Non-model model organisms.

Authors:  James J Russell; Julie A Theriot; Pranidhi Sood; Wallace F Marshall; Laura F Landweber; Lillian Fritz-Laylin; Jessica K Polka; Snezhana Oliferenko; Therese Gerbich; Amy Gladfelter; James Umen; Magdalena Bezanilla; Madeline A Lancaster; Shuonan He; Matthew C Gibson; Bob Goldstein; Elly M Tanaka; Chi-Kuo Hu; Anne Brunet
Journal:  BMC Biol       Date:  2017-06-29       Impact factor: 7.431

10.  Inducible asymmetric cell division and cell differentiation in a bacterium.

Authors:  Nikolai V Mushnikov; Anastasia Fomicheva; Mark Gomelsky; Grant R Bowman
Journal:  Nat Chem Biol       Date:  2019-08-12       Impact factor: 15.040

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