Literature DB >> 29887666

Splenomegaly Segmentation using Global Convolutional Kernels and Conditional Generative Adversarial Networks.

Yuankai Huo1, Zhoubing Xu1, Shunxing Bao2, Camilo Bermudez3, Andrew J Plassard2, Jiaqi Liu2, Yuang Yao2, Albert Assad4, Richard G Abramson5, Bennett A Landman1,2,3,5.   

Abstract

Spleen volume estimation using automated image segmentation technique may be used to detect splenomegaly (abnormally enlarged spleen) on Magnetic Resonance Imaging (MRI) scans. In recent years, Deep Convolutional Neural Networks (DCNN) segmentation methods have demonstrated advantages for abdominal organ segmentation. However, variations in both size and shape of the spleen on MRI images may result in large false positive and false negative labeling when deploying DCNN based methods. In this paper, we propose the Splenomegaly Segmentation Network (SSNet) to address spatial variations when segmenting extraordinarily large spleens. SSNet was designed based on the framework of image-to-image conditional generative adversarial networks (cGAN). Specifically, the Global Convolutional Network (GCN) was used as the generator to reduce false negatives, while the Markovian discriminator (PatchGAN) was used to alleviate false positives. A cohort of clinically acquired 3D MRI scans (both T1 weighted and T2 weighted) from patients with splenomegaly were used to train and test the networks. The experimental results demonstrated that a mean Dice coefficient of 0.9260 and a median Dice coefficient of 0.9262 using SSNet on independently tested MRI volumes of patients with splenomegaly.

Entities:  

Year:  2018        PMID: 29887666      PMCID: PMC5992918          DOI: 10.1117/12.2293406

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  14 in total

1.  Normal splenic volumes estimated using three-dimensional ultrasonography.

Authors:  I De Odorico; K A Spaulding; D H Pretorius; A S Lev-Toaff; T B Bailey; T R Nelson
Journal:  J Ultrasound Med       Date:  1999-03       Impact factor: 2.153

2.  Determination of splenomegaly by CT: is there a place for a single measurement?

Authors:  Alexandre S Bezerra; Giuseppe D'Ippolito; Salomão Faintuch; Jacob Szejnfeld; Muneeb Ahmed
Journal:  AJR Am J Roentgenol       Date:  2005-05       Impact factor: 3.959

3.  Efficient multi-atlas abdominal segmentation on clinically acquired CT with SIMPLE context learning.

Authors:  Zhoubing Xu; Ryan P Burke; Christopher P Lee; Rebeccah B Baucom; Benjamin K Poulose; Richard G Abramson; Bennett A Landman
Journal:  Med Image Anal       Date:  2015-05-21       Impact factor: 8.545

4.  Multi-Atlas Spleen Segmentation on CT Using Adaptive Context Learning.

Authors:  Jiaqi Liu; Yuankai Huo; Zhoubing Xu; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

5.  Automatic 3D liver segmentation based on deep learning and globally optimized surface evolution.

Authors:  Peijun Hu; Fa Wu; Jialin Peng; Ping Liang; Dexing Kong
Journal:  Phys Med Biol       Date:  2016-11-23       Impact factor: 3.609

6.  Robust Multicontrast MRI Spleen Segmentation for Splenomegaly Using Multi-Atlas Segmentation.

Authors:  Yuankai Huo; Jiaqi Liu; Zhoubing Xu; Robert L Harrigan; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Biomed Eng       Date:  2018-02       Impact factor: 4.538

Review 7.  Splenic function: normal, too much and too little.

Authors:  E R Eichner
Journal:  Am J Med       Date:  1979-02       Impact factor: 4.965

8.  Sonographic assessment of normal spleen volume.

Authors:  A J Rodrigues Júnior; C J Rodrigues; M A Germano; I Rasera Júnior; G G Cerri
Journal:  Clin Anat       Date:  1995       Impact factor: 2.414

9.  Multi-atlas Segmentation Enables Robust Multi-contrast MRI Spleen Segmentation for Splenomegaly.

Authors:  Yuankai Huo; Jiaqi Liu; Zhoubing Xu; Robert L Harrigan; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

10.  Spleen size: how well do linear ultrasound measurements correlate with three-dimensional CT volume assessments?

Authors:  P M Lamb; A Lund; R R Kanagasabay; A Martin; J A W Webb; R H Reznek
Journal:  Br J Radiol       Date:  2002-07       Impact factor: 3.039

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  13 in total

1.  Improving Splenomegaly Segmentation by Learning from Heterogeneous Multi-Source Labels.

Authors:  Yucheng Tang; Yuankai Huo; Yunxi Xiong; Hyeonsoo Moon; Albert Assad; Tamara K Moyo; Michael R Savona; Richard Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15

2.  Coronary Calcium Detection using 3D Attention Identical Dual Deep Network Based on Weakly Supervised Learning.

Authors:  Yuankai Huo; James G Terry; Jiachen Wang; Vishwesh Nath; Camilo Bermudez; Shunxing Bao; Prasanna Parvathaneni; J Jeffery Carr; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15

3.  Fully automatic liver attenuation estimation combing CNN segmentation and morphological operations.

Authors:  Yuankai Huo; James G Terry; Jiachen Wang; Sangeeta Nair; Thomas A Lasko; Barry I Freedman; J Jeffery Carr; Bennett A Landman
Journal:  Med Phys       Date:  2019-07-05       Impact factor: 4.071

4.  One-Shot Generative Adversarial Learning for MRI Segmentation of Craniomaxillofacial Bony Structures.

Authors:  Xu Chen; Chunfeng Lian; Li Wang; Hannah Deng; Steve H Fung; Dong Nie; Kim-Han Thung; Pew-Thian Yap; Jaime Gateno; James J Xia; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2019-08-14       Impact factor: 10.048

5.  Acceleration of spleen segmentation with end-to-end deep learning method and automated pipeline.

Authors:  Hyeonsoo Moon; Yuankai Huo; Richard G Abramson; Richard Alan Peters; Albert Assad; Tamara K Moyo; Michael R Savona; Bennett A Landman
Journal:  Comput Biol Med       Date:  2019-02-05       Impact factor: 4.589

6.  SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth.

Authors:  Yuankai Huo; Zhoubing Xu; Hyeonsoo Moon; Shunxing Bao; Albert Assad; Tamara K Moyo; Michael R Savona; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2018-10-17       Impact factor: 10.048

7.  Validation and estimation of spleen volume via computer-assisted segmentation on clinically acquired CT scans.

Authors:  Yiyuan Yang; Yucheng Tang; Riqiang Gao; Shunxing Bao; Yuankai Huo; Matthew T McKenna; Michael R Savona; Richard G Abramson; Bennett A Landman
Journal:  J Med Imaging (Bellingham)       Date:  2021-02-19

8.  Fully Automatic Volume Measurement of the Spleen at CT Using Deep Learning.

Authors:  Gabriel E Humpire-Mamani; Joris Bukala; Ernst T Scholten; Mathias Prokop; Bram van Ginneken; Colin Jacobs
Journal:  Radiol Artif Intell       Date:  2020-07-22

Review 9.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

Review 10.  Towards Portable Large-Scale Image Processing with High-Performance Computing.

Authors:  Yuankai Huo; Justin Blaber; Stephen M Damon; Brian D Boyd; Shunxing Bao; Prasanna Parvathaneni; Camilo Bermudez Noguera; Shikha Chaganti; Vishwesh Nath; Jasmine M Greer; Ilwoo Lyu; William R French; Allen T Newton; Baxter P Rogers; Bennett A Landman
Journal:  J Digit Imaging       Date:  2018-06       Impact factor: 4.056

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