Literature DB >> 28736468

Multi-Atlas Spleen Segmentation on CT Using Adaptive Context Learning.

Jiaqi Liu1, Yuankai Huo2, Zhoubing Xu2, Albert Assad3, Richard G Abramson4, Bennett A Landman1,2,4.   

Abstract

Automatic spleen segmentation on CT is challenging due to the complexity of abdominal structures. Multi-atlas segmentation (MAS) has shown to be a promising approach to conduct spleen segmentation. To deal with the substantial registration errors between the heterogeneous abdominal CT images, the context learning method for performance level estimation (CLSIMPLE) method was previously proposed. The context learning method generates a probability map for a target image using a Gaussian mixture model (GMM) as the prior in a Bayesian framework. However, the CLSSIMPLE typically trains a single GMM from the entire heterogeneous training atlas set. Therefore, the estimated spatial prior maps might not represent specific target images accurately. Rather than using all training atlases, we propose an adaptive GMM based context learning technique (AGMMCL) to train the GMM adaptively using subsets of the training data with the subsets tailored for different target images. Training sets are selected adaptively based on the similarity between atlases and the target images using cranio-caudal length, which is derived manually from the target image. To validate the proposed method, a heterogeneous dataset with a large variation of spleen sizes (100 cc to 9000 cc) is used. We designate a metric of size to differentiate each group of spleens, with 0 to 100 cc as small, 200 to 500cc as medium, 500 to 1000 cc as large, 1000 to 2000 cc as XL, and 2000 and above as XXL. From the results, AGMMCL leads to more accurate spleen segmentations by training GMMs adaptively for different target images.

Entities:  

Year:  2017        PMID: 28736468      PMCID: PMC5521267          DOI: 10.1117/12.2254437

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  22 in total

1.  Atlas-based automated segmentation of spleen and liver using adaptive enhancement estimation.

Authors:  Marius George Linguraru; Jesse K Sandberg; Zhixi Li; John A Pura; Ronald M Summers
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

2.  Medical image segmentation by combining graph cuts and oriented active appearance models.

Authors:  Xinjian Chen; Jayaram K Udupa; Ulas Bagci; Ying Zhuge; Jianhua Yao
Journal:  IEEE Trans Image Process       Date:  2012-01-31       Impact factor: 10.856

3.  Multiple abdominal organ segmentation: an atlas-based fuzzy connectedness approach.

Authors:  Yongxin Zhou; Jing Bai
Journal:  IEEE Trans Inf Technol Biomed       Date:  2007-05

4.  Automated abdominal multi-organ segmentation with subject-specific atlas generation.

Authors:  Robin Wolz; Chengwen Chu; Kazunari Misawa; Michitaka Fujiwara; Kensaku Mori; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2013-06-03       Impact factor: 10.048

5.  Fast free-form deformation using graphics processing units.

Authors:  Marc Modat; Gerard R Ridgway; Zeike A Taylor; Manja Lehmann; Josephine Barnes; David J Hawkes; Nick C Fox; Sébastien Ourselin
Journal:  Comput Methods Programs Biomed       Date:  2009-10-08       Impact factor: 5.428

6.  Efficient multi-atlas abdominal segmentation on clinically acquired CT with SIMPLE context learning.

Authors:  Zhoubing Xu; Ryan P Burke; Christopher P Lee; Rebeccah B Baucom; Benjamin K Poulose; Richard G Abramson; Bennett A Landman
Journal:  Med Image Anal       Date:  2015-05-21       Impact factor: 8.545

7.  Automated segmentation and quantification of liver and spleen from CT images using normalized probabilistic atlases and enhancement estimation.

Authors:  Marius George Linguraru; Jesse K Sandberg; Zhixi Li; Furhawn Shah; Ronald M Summers
Journal:  Med Phys       Date:  2010-02       Impact factor: 4.071

8.  SIMPLE is a good idea (and better with context learning).

Authors:  Zhoubing Xu; Andrew J Asman; Peter L Shanahan; Richard G Abramson; Bennett A Landman
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

9.  Spleen size: how well do linear ultrasound measurements correlate with three-dimensional CT volume assessments?

Authors:  P M Lamb; A Lund; R R Kanagasabay; A Martin; J A W Webb; R H Reznek
Journal:  Br J Radiol       Date:  2002-07       Impact factor: 3.039

10.  Multiatlas segmentation of thoracic and abdominal anatomy with level set-based local search.

Authors:  Eduard Schreibmann; David M Marcus; Tim Fox
Journal:  J Appl Clin Med Phys       Date:  2014-07-08       Impact factor: 2.102

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  7 in total

1.  Improving Splenomegaly Segmentation by Learning from Heterogeneous Multi-Source Labels.

Authors:  Yucheng Tang; Yuankai Huo; Yunxi Xiong; Hyeonsoo Moon; Albert Assad; Tamara K Moyo; Michael R Savona; Richard Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15

2.  Fully Convolutional Neural Networks Improve Abdominal Organ Segmentation.

Authors:  Meg F Bobo; Shunxing Bao; Yuankai Huo; Yuang Yao; Jack Virostko; Andrew J Plassard; Ilwoo Lyu; Albert Assad; Richard G Abramson; Melissa A Hilmes; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

3.  Splenomegaly Segmentation using Global Convolutional Kernels and Conditional Generative Adversarial Networks.

Authors:  Yuankai Huo; Zhoubing Xu; Shunxing Bao; Camilo Bermudez; Andrew J Plassard; Jiaqi Liu; Yuang Yao; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

4.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

5.  Robust Multicontrast MRI Spleen Segmentation for Splenomegaly Using Multi-Atlas Segmentation.

Authors:  Yuankai Huo; Jiaqi Liu; Zhoubing Xu; Robert L Harrigan; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Biomed Eng       Date:  2018-02       Impact factor: 4.538

6.  SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth.

Authors:  Yuankai Huo; Zhoubing Xu; Hyeonsoo Moon; Shunxing Bao; Albert Assad; Tamara K Moyo; Michael R Savona; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2018-10-17       Impact factor: 10.048

7.  High-resolution 3D abdominal segmentation with random patch network fusion.

Authors:  Yucheng Tang; Riqiang Gao; Ho Hin Lee; Shizhong Han; Yunqiang Chen; Dashan Gao; Vishwesh Nath; Camilo Bermudez; Michael R Savona; Richard G Abramson; Shunxing Bao; Ilwoo Lyu; Yuankai Huo; Bennett A Landman
Journal:  Med Image Anal       Date:  2020-12-16       Impact factor: 13.828

  7 in total

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