Literature DB >> 33937830

Fully Automatic Volume Measurement of the Spleen at CT Using Deep Learning.

Gabriel E Humpire-Mamani1, Joris Bukala1, Ernst T Scholten1, Mathias Prokop1, Bram van Ginneken1, Colin Jacobs1.   

Abstract

PURPOSE: To develop a fully automated algorithm for spleen segmentation and to assess the performance of this algorithm in a large dataset.
MATERIALS AND METHODS: In this retrospective study, a three-dimensional deep learning network was developed to segment the spleen on thorax-abdomen CT scans. Scans were extracted from patients undergoing oncologic treatment from 2014 to 2017. A total of 1100 scans from 1100 patients were used in this study, and 400 were selected for development of the algorithm. For testing, a dataset of 50 scans was annotated to assess the segmentation accuracy and was compared against the splenic index equation. In a qualitative observer experiment, an enriched set of 100 scan-pairs was used to evaluate whether the algorithm could aid a radiologist in assessing splenic volume change. The reference standard was set by the consensus of two other independent radiologists. A Mann-Whitney U test was conducted to test whether there was a performance difference between the algorithm and the independent observer.
RESULTS: The algorithm and the independent observer obtained comparable Dice scores (P = .834) on the test set of 50 scans of 0.962 and 0.964, respectively. The radiologist had an agreement with the reference standard in 81% (81 of 100) of the cases after a visual classification of volume change, which increased to 92% (92 of 100) when aided by the algorithm.
CONCLUSION: A segmentation method based on deep learning can accurately segment the spleen on CT scans and may help radiologists to detect abnormal splenic volumes and splenic volume changes.Supplemental material is available for this article.© RSNA, 2020. 2020 by the Radiological Society of North America, Inc.

Entities:  

Year:  2020        PMID: 33937830      PMCID: PMC8082410          DOI: 10.1148/ryai.2020190102

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  30 in total

Review 1.  Radiology of the spleen.

Authors:  F Robertson; P Leander; O Ekberg
Journal:  Eur Radiol       Date:  2001       Impact factor: 5.315

2.  Automated abdominal multi-organ segmentation with subject-specific atlas generation.

Authors:  Robin Wolz; Chengwen Chu; Kazunari Misawa; Michitaka Fujiwara; Kensaku Mori; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2013-06-03       Impact factor: 10.048

3.  Automated segmentation and quantification of liver and spleen from CT images using normalized probabilistic atlases and enhancement estimation.

Authors:  Marius George Linguraru; Jesse K Sandberg; Zhixi Li; Furhawn Shah; Ronald M Summers
Journal:  Med Phys       Date:  2010-02       Impact factor: 4.071

4.  Fully automated organ segmentation in male pelvic CT images.

Authors:  Anjali Balagopal; Samaneh Kazemifar; Dan Nguyen; Mu-Han Lin; Raquibul Hannan; Amir Owrangi; Steve Jiang
Journal:  Phys Med Biol       Date:  2018-12-14       Impact factor: 3.609

Review 5.  A survey on deep learning in medical image analysis.

Authors:  Geert Litjens; Thijs Kooi; Babak Ehteshami Bejnordi; Arnaud Arindra Adiyoso Setio; Francesco Ciompi; Mohsen Ghafoorian; Jeroen A W M van der Laak; Bram van Ginneken; Clara I Sánchez
Journal:  Med Image Anal       Date:  2017-07-26       Impact factor: 8.545

6.  An application of cascaded 3D fully convolutional networks for medical image segmentation.

Authors:  Holger R Roth; Hirohisa Oda; Xiangrong Zhou; Natsuki Shimizu; Ying Yang; Yuichiro Hayashi; Masahiro Oda; Michitaka Fujiwara; Kazunari Misawa; Kensaku Mori
Journal:  Comput Med Imaging Graph       Date:  2018-03-16       Impact factor: 4.790

7.  Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.

Authors:  Babak Ehteshami Bejnordi; Mitko Veta; Paul Johannes van Diest; Bram van Ginneken; Nico Karssemeijer; Geert Litjens; Jeroen A W M van der Laak; Meyke Hermsen; Quirine F Manson; Maschenka Balkenhol; Oscar Geessink; Nikolaos Stathonikos; Marcory Crf van Dijk; Peter Bult; Francisco Beca; Andrew H Beck; Dayong Wang; Aditya Khosla; Rishab Gargeya; Humayun Irshad; Aoxiao Zhong; Qi Dou; Quanzheng Li; Hao Chen; Huang-Jing Lin; Pheng-Ann Heng; Christian Haß; Elia Bruni; Quincy Wong; Ugur Halici; Mustafa Ümit Öner; Rengul Cetin-Atalay; Matt Berseth; Vitali Khvatkov; Alexei Vylegzhanin; Oren Kraus; Muhammad Shaban; Nasir Rajpoot; Ruqayya Awan; Korsuk Sirinukunwattana; Talha Qaiser; Yee-Wah Tsang; David Tellez; Jonas Annuscheit; Peter Hufnagl; Mira Valkonen; Kimmo Kartasalo; Leena Latonen; Pekka Ruusuvuori; Kaisa Liimatainen; Shadi Albarqouni; Bharti Mungal; Ami George; Stefanie Demirci; Nassir Navab; Seiryo Watanabe; Shigeto Seno; Yoichi Takenaka; Hideo Matsuda; Hady Ahmady Phoulady; Vassili Kovalev; Alexander Kalinovsky; Vitali Liauchuk; Gloria Bueno; M Milagro Fernandez-Carrobles; Ismael Serrano; Oscar Deniz; Daniel Racoceanu; Rui Venâncio
Journal:  JAMA       Date:  2017-12-12       Impact factor: 56.272

8.  Chemotherapy-induced splenic volume increase is independently associated with major complications after hepatic resection for metastatic colorectal cancer.

Authors:  Amber L Simpson; Julie N Leal; Amudhan Pugalenthi; Peter J Allen; Ronald P DeMatteo; Yuman Fong; Mithat Gönen; William R Jarnagin; T Peter Kingham; Michael I Miga; Jinru Shia; Martin R Weiser; Michael I D'Angelica
Journal:  J Am Coll Surg       Date:  2014-12-13       Impact factor: 6.113

9.  Splenic volume measurements on computed tomography utilizing automatically contouring software and its relationship with age, gender, and anthropometric parameters.

Authors:  Ardene Harris; Tamotsu Kamishima; Hong Yi Hao; Fumi Kato; Tokuhiko Omatsu; Yuya Onodera; Satoshi Terae; Hiroki Shirato
Journal:  Eur J Radiol       Date:  2009-09-22       Impact factor: 3.528

10.  Discriminative dictionary learning for abdominal multi-organ segmentation.

Authors:  Tong Tong; Robin Wolz; Zehan Wang; Qinquan Gao; Kazunari Misawa; Michitaka Fujiwara; Kensaku Mori; Joseph V Hajnal; Daniel Rueckert
Journal:  Med Image Anal       Date:  2015-05-05       Impact factor: 8.545

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  3 in total

1.  Radiomics Features of the Spleen as Surrogates for CT-Based Lymphoma Diagnosis and Subtype Differentiation.

Authors:  Johanna S Enke; Jan H Moltz; Melvin D'Anastasi; Wolfgang G Kunz; Christian Schmidt; Stefan Maurus; Alexander Mühlberg; Alexander Katzmann; Michael Sühling; Horst Hahn; Dominik Nörenberg; Thomas Huber
Journal:  Cancers (Basel)       Date:  2022-01-29       Impact factor: 6.639

2.  Prevalence and clinical significance of clinically evident portal hypertension in patients with hepatocellular carcinoma undergoing transarterial chemoembolization.

Authors:  Lukas Müller; Felix Hahn; Aline Mähringer-Kunz; Fabian Stoehr; Simon Johannes Gairing; Friedrich Foerster; Arndt Weinmann; Peter Robert Galle; Jens Mittler; Daniel Pinto Dos Santos; Michael Bernhard Pitton; Christoph Düber; Uli Fehrenbach; Timo Alexander Auer; Bernhard Gebauer; Roman Kloeckner
Journal:  United European Gastroenterol J       Date:  2021-12-16       Impact factor: 4.623

3.  Evaluation of a Deep Learning Algorithm for Automated Spleen Segmentation in Patients with Conditions Directly or Indirectly Affecting the Spleen.

Authors:  Aymen Meddeb; Tabea Kossen; Keno K Bressem; Bernd Hamm; Sebastian N Nagel
Journal:  Tomography       Date:  2021-12-13
  3 in total

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