Literature DB >> 33634205

Validation and estimation of spleen volume via computer-assisted segmentation on clinically acquired CT scans.

Yiyuan Yang1, Yucheng Tang1, Riqiang Gao1, Shunxing Bao1, Yuankai Huo1, Matthew T McKenna2,3, Michael R Savona2,4,5, Richard G Abramson6, Bennett A Landman1,2,7.   

Abstract

Purpose: Deep learning is a promising technique for spleen segmentation. Our study aims to validate the reproducibility of deep learning-based spleen volume estimation by performing spleen segmentation on clinically acquired computed tomography (CT) scans from patients with myeloproliferative neoplasms. Approach: As approved by the institutional review board, we obtained 138 de-identified abdominal CT scans. A sum of voxel volume on an expert annotator's segmentations establishes the ground truth (estimation 1). We used our deep convolutional neural network (estimation 2) alongside traditional linear estimations (estimation 3 and 4) to estimate spleen volumes independently. Dice coefficient, Hausdorff distance, R 2 coefficient, Pearson R coefficient, the absolute difference in volume, and the relative difference in volume were calculated for 2 to 4 against the ground truth to compare and assess methods' performances. We re-labeled on scan-rescan on a subset of 40 studies to evaluate method reproducibility.
Results: Calculated against the ground truth, the R 2 coefficients for our method (estimation 2) and linear method (estimation 3 and 4) are 0.998, 0.954, and 0.973, respectively. The Pearson R coefficients for the estimations against the ground truth are 0.999, 0.963, and 0.978, respectively (paired t -tests produced p < 0.05 between 2 and 3, and 2 and 4).
Conclusion: The deep convolutional neural network algorithm shows excellent potential in rendering more precise spleen volume estimations. Our computer-aided segmentation exhibits reasonable improvements in splenic volume estimation accuracy.
© 2021 Society of Photo-Optical Instrumentation Engineers (SPIE).

Entities:  

Keywords:  computed tomography; deep learning; image segmentation; spleen; splenomegaly

Year:  2021        PMID: 33634205      PMCID: PMC7893322          DOI: 10.1117/1.JMI.8.1.014004

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  22 in total

1.  Improving Splenomegaly Segmentation by Learning from Heterogeneous Multi-Source Labels.

Authors:  Yucheng Tang; Yuankai Huo; Yunxi Xiong; Hyeonsoo Moon; Albert Assad; Tamara K Moyo; Michael R Savona; Richard Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15

2.  A collaborative enterprise for multi-stakeholder participation in the advancement of quantitative imaging.

Authors:  Andrew J Buckler; Linda Bresolin; N Reed Dunnick; Daniel C Sullivan
Journal:  Radiology       Date:  2011-03       Impact factor: 11.105

3.  A pooled analysis of overall survival in COMFORT-I and COMFORT-II, 2 randomized phase III trials of ruxolitinib for the treatment of myelofibrosis.

Authors:  Alessandro M Vannucchi; Hagop M Kantarjian; Jean-Jacques Kiladjian; Jason Gotlib; Francisco Cervantes; Ruben A Mesa; Nicholas J Sarlis; Wei Peng; Victor Sandor; Prashanth Gopalakrishna; Abdel Hmissi; Viktoriya Stalbovskaya; Vikas Gupta; Claire Harrison; Srdan Verstovsek
Journal:  Haematologica       Date:  2015-06-11       Impact factor: 9.941

4.  A double-blind, placebo-controlled trial of ruxolitinib for myelofibrosis.

Authors:  Srdan Verstovsek; Ruben A Mesa; Jason Gotlib; Richard S Levy; Vikas Gupta; John F DiPersio; John V Catalano; Michael Deininger; Carole Miller; Richard T Silver; Moshe Talpaz; Elliott F Winton; Jimmie H Harvey; Murat O Arcasoy; Elizabeth Hexner; Roger M Lyons; Ronald Paquette; Azra Raza; Kris Vaddi; Susan Erickson-Viitanen; Iphigenia L Koumenis; William Sun; Victor Sandor; Hagop M Kantarjian
Journal:  N Engl J Med       Date:  2012-03-01       Impact factor: 91.245

5.  Robust Multicontrast MRI Spleen Segmentation for Splenomegaly Using Multi-Atlas Segmentation.

Authors:  Yuankai Huo; Jiaqi Liu; Zhoubing Xu; Robert L Harrigan; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Biomed Eng       Date:  2018-02       Impact factor: 4.538

6.  Splenomegaly Segmentation on Multi-Modal MRI Using Deep Convolutional Networks.

Authors:  Yuankai Huo; Zhoubing Xu; Shunxing Bao; Camilo Bermudez; Hyeonsoo Moon; Prasanna Parvathaneni; Tamara K Moyo; Michael R Savona; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2018-11-13       Impact factor: 10.048

Review 7.  Clinical utility of quantitative imaging.

Authors:  Andrew B Rosenkrantz; Mishal Mendiratta-Lala; Brian J Bartholmai; Dhakshinamoorthy Ganeshan; Richard G Abramson; Kirsteen R Burton; John-Paul J Yu; Ernest M Scalzetti; Thomas E Yankeelov; Rathan M Subramaniam; Leon Lenchik
Journal:  Acad Radiol       Date:  2014-10-22       Impact factor: 3.173

Review 8.  Methods and challenges in quantitative imaging biomarker development.

Authors:  Richard G Abramson; Kirsteen R Burton; John-Paul J Yu; Ernest M Scalzetti; Thomas E Yankeelov; Andrew B Rosenkrantz; Mishal Mendiratta-Lala; Brian J Bartholmai; Dhakshinamoorthy Ganeshan; Leon Lenchik; Rathan M Subramaniam
Journal:  Acad Radiol       Date:  2015-01       Impact factor: 3.173

9.  SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth.

Authors:  Yuankai Huo; Zhoubing Xu; Hyeonsoo Moon; Shunxing Bao; Albert Assad; Tamara K Moyo; Michael R Savona; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2018-10-17       Impact factor: 10.048

10.  Improving Spleen Volume Estimation Via Computer-assisted Segmentation on Clinically Acquired CT Scans.

Authors:  Zhoubing Xu; Adam L Gertz; Ryan P Burke; Neil Bansal; Hakmook Kang; Bennett A Landman; Richard G Abramson
Journal:  Acad Radiol       Date:  2016-08-09       Impact factor: 3.173

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  1 in total

1.  Evaluation of a Deep Learning Algorithm for Automated Spleen Segmentation in Patients with Conditions Directly or Indirectly Affecting the Spleen.

Authors:  Aymen Meddeb; Tabea Kossen; Keno K Bressem; Bernd Hamm; Sebastian N Nagel
Journal:  Tomography       Date:  2021-12-13
  1 in total

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