Literature DB >> 31184514

An outlook on using serial femtosecond crystallography in drug discovery.

Alexey Mishin1, Anastasiia Gusach1, Aleksandra Luginina1, Egor Marin1, Valentin Borshchevskiy1, Vadim Cherezov1,2.   

Abstract

Introduction: X-ray crystallography has made important contributions to modern drug development but its application to many important drug targets has been extremely challenging. The recent emergence of X-ray free electron lasers (XFELs) and advancements in serial femtosecond crystallography (SFX) have offered new opportunities to overcome limitations of traditional crystallography to accelerate the structure-based drug discovery (SBDD) process. Areas covered: In this review, the authors describe the general principles of X-ray generation and the main properties of XFEL beams, outline details of SFX data collection and processing, and summarize the progress in the development of associated instrumentation for sample delivery and X-ray detection. An overview of the SFX applications to various important drug targets such as membrane proteins is also provided. Expert opinion: While SFX has already made clear advancements toward the understanding of the structure and dynamics of several major drug targets, its robust application in SBDD still needs further developments of new high-throughput techniques for sample production, automation of crystal delivery and data collection, as well as for processing and storage of large amounts of data. The expansion of the available XFEL beamtime is a key to the success of SFX in SBDD.

Entities:  

Keywords:  G Protein Coupled Receptor (GPCR); Lipidic Cubic Phase (LCP); Serial Femtosecond Crystallography (SFX); X-ray Free Electron Laser (XFEL); membrane protein; structure based drug discovery (SBDD)

Mesh:

Year:  2019        PMID: 31184514      PMCID: PMC6687307          DOI: 10.1080/17460441.2019.1626822

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  119 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

Review 2.  How to improve R&D productivity: the pharmaceutical industry's grand challenge.

Authors:  Steven M Paul; Daniel S Mytelka; Christopher T Dunwiddie; Charles C Persinger; Bernard H Munos; Stacy R Lindborg; Aaron L Schacht
Journal:  Nat Rev Drug Discov       Date:  2010-02-19       Impact factor: 84.694

3.  X-ray analyses of peptide-inhibitor complexes define the structural basis of specificity for human and mouse renins.

Authors:  V Dhanaraj; C G Dealwis; C Frazao; M Badasso; B L Sibanda; I J Tickle; J B Cooper; H P Driessen; M Newman; C Aguilar
Journal:  Nature       Date:  1992-06-11       Impact factor: 49.962

Review 4.  In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling.

Authors:  S Ekins; J Mestres; B Testa
Journal:  Br J Pharmacol       Date:  2007-06-04       Impact factor: 8.739

5.  High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.

Authors:  Vadim Cherezov; Daniel M Rosenbaum; Michael A Hanson; Søren G F Rasmussen; Foon Sun Thian; Tong Sun Kobilka; Hee-Jung Choi; Peter Kuhn; William I Weis; Brian K Kobilka; Raymond C Stevens
Journal:  Science       Date:  2007-10-25       Impact factor: 47.728

6.  SAR index: quantifying the nature of structure-activity relationships.

Authors:  Lisa Peltason; Jürgen Bajorath
Journal:  J Med Chem       Date:  2007-09-29       Impact factor: 7.446

Review 7.  Structure-based design of molecular cancer therapeutics.

Authors:  Rob L M van Montfort; Paul Workman
Journal:  Trends Biotechnol       Date:  2009-03-30       Impact factor: 19.536

Review 8.  Lessons from 60 years of pharmaceutical innovation.

Authors:  Bernard Munos
Journal:  Nat Rev Drug Discov       Date:  2009-12       Impact factor: 84.694

9.  Crystallizing membrane proteins using lipidic mesophases.

Authors:  Martin Caffrey; Vadim Cherezov
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

10.  Influenza neuraminidase inhibitors possessing a novel hydrophobic interaction in the enzyme active site: design, synthesis, and structural analysis of carbocyclic sialic acid analogues with potent anti-influenza activity.

Authors:  C U Kim; W Lew; M A Williams; H Liu; L Zhang; S Swaminathan; N Bischofberger; M S Chen; D B Mendel; C Y Tai; W G Laver; R C Stevens
Journal:  J Am Chem Soc       Date:  1997-01-29       Impact factor: 15.419

View more
  6 in total

1.  RCSB Protein Data Bank: Enabling biomedical research and drug discovery.

Authors:  David S Goodsell; Christine Zardecki; Luigi Di Costanzo; Jose M Duarte; Brian P Hudson; Irina Persikova; Joan Segura; Chenghua Shao; Maria Voigt; John D Westbrook; Jasmine Y Young; Stephen K Burley
Journal:  Protein Sci       Date:  2019-11-29       Impact factor: 6.725

2.  MicroED structure of the human adenosine receptor determined from a single nanocrystal in LCP.

Authors:  Michael W Martynowycz; Anna Shiriaeva; Xuanrui Ge; Johan Hattne; Brent L Nannenga; Vadim Cherezov; Tamir Gonen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

3.  A Retrospective Look at the Impact of Binding Site Environment on the Optimization of TRPA1 Antagonists.

Authors:  Elisia Villemure; Jack A Terrett; Robin Larouche-Gauthier; Martin Déry; Huifen Chen; Rebecca M Reese; Shannon D Shields; Jun Chen; Steven Magnuson; Matthew Volgraf
Journal:  ACS Med Chem Lett       Date:  2021-07-19       Impact factor: 4.632

4.  Toward G protein-coupled receptor structure-based drug design using X-ray lasers.

Authors:  Andrii Ishchenko; Benjamin Stauch; Gye Won Han; Alexander Batyuk; Anna Shiriaeva; Chufeng Li; Nadia Zatsepin; Uwe Weierstall; Wei Liu; Eriko Nango; Takanori Nakane; Rie Tanaka; Kensuke Tono; Yasumasa Joti; So Iwata; Isabel Moraes; Cornelius Gati; Vadim Cherezov
Journal:  IUCrJ       Date:  2019-10-24       Impact factor: 4.769

5.  3D printed devices and infrastructure for liquid sample delivery at the European XFEL.

Authors:  Mohammad Vakili; Johan Bielecki; Juraj Knoška; Florian Otte; Huijong Han; Marco Kloos; Robin Schubert; Elisa Delmas; Grant Mills; Raphael de Wijn; Romain Letrun; Simon Dold; Richard Bean; Adam Round; Yoonhee Kim; Frederico A Lima; Katerina Dörner; Joana Valerio; Michael Heymann; Adrian P Mancuso; Joachim Schulz
Journal:  J Synchrotron Radiat       Date:  2022-02-15       Impact factor: 2.616

6.  Fixed-target serial crystallography at the Structural Biology Center.

Authors:  Darren A Sherrell; Alex Lavens; Mateusz Wilamowski; Youngchang Kim; Ryan Chard; Krzysztof Lazarski; Gerold Rosenbaum; Rafael Vescovi; Jessica L Johnson; Chase Akins; Changsoo Chang; Karolina Michalska; Gyorgy Babnigg; Ian Foster; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2022-08-17       Impact factor: 2.557

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.