Literature DB >> 8921626

Determination of the inelastic mean free path in ice by examination of tilted vesicles and automated most probable loss imaging.

R Grimm1, D Typke, M Bärmann, W Baumeister.   

Abstract

Using electron microscopy, the thickness of ice-embedded vesicles is estimated examining tilted and untilted views and assuming an ellipsoidal shape of the vesicles that appear to be circular in the untilted view. Another thickness measure is obtained from the ratio of the unfiltered and zero-loss-filtered image intensities of the vesicle. From these two measurements, the mean free path A for inelastic scattering of electrons in ice is calculated as 203 +/- 33 nm for 120 kV acceleration voltage. It is found that vesicles in thin ice films (< or = 1.5 lambda) significantly protrude out of the ice film. Due to surface tension the shape becomes an oblate ellipsoid. In holes covered with a thick ice film (> or = 3 lambda) and strong thickness gradients, vesicles are predominantly found in regions where the ice thickness is appropriate for their size. Also, a way of imaging the most probable loss under low-dose conditions involving thickness measurement is proposed. Even at large ice thicknesses zero-loss filtering always gives better image contrast. Most probable loss imaging can only help where there is no intensity in the zero-loss image, at very large thicknesses (lambda > 8).

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Year:  1996        PMID: 8921626     DOI: 10.1016/0304-3991(96)00035-6

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  24 in total

1.  Identification of macromolecular complexes in cryoelectron tomograms of phantom cells.

Authors:  Achilleas S Frangakis; Jochen Böhm; Friedrich Förster; Stephan Nickell; Daniela Nicastro; Dieter Typke; Reiner Hegerl; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

Review 2.  Electron cryotomography.

Authors:  Elitza I Tocheva; Zhuo Li; Grant J Jensen
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

3.  Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.

Authors:  Michael W Martynowycz; Wei Zhao; Johan Hattne; Grant J Jensen; Tamir Gonen
Journal:  Structure       Date:  2019-08-15       Impact factor: 5.006

4.  Electron tomography of ice-embedded prokaryotic cells.

Authors:  R Grimm; H Singh; R Rachel; D Typke; W Zillig; W Baumeister
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

5.  Energy filtered electron tomography of ice-embedded actin and vesicles.

Authors:  R Grimm; M Bärmann; W Häckl; D Typke; E Sackmann; W Baumeister
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

6.  Simultaneous determination of sample thickness, tilt, and electron mean free path using tomographic tilt images based on Beer-Lambert law.

Authors:  Rui Yan; Thomas J Edwards; Logan M Pankratz; Richard J Kuhn; Jason K Lanman; Jun Liu; Wen Jiang
Journal:  J Struct Biol       Date:  2015-10-09       Impact factor: 2.867

7.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

Review 8.  Cryo-electron tomography of bacteria: progress, challenges and future prospects.

Authors:  Jacqueline L S Milne; Sriram Subramaniam
Journal:  Nat Rev Microbiol       Date:  2009-08-10       Impact factor: 60.633

9.  Routine determination of ice thickness for cryo-EM grids.

Authors:  William J Rice; Anchi Cheng; Alex J Noble; Edward T Eng; Laura Y Kim; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2018-07-04       Impact factor: 2.867

Review 10.  Cryo-electron tomography of bacterial viruses.

Authors:  Ricardo C Guerrero-Ferreira; Elizabeth R Wright
Journal:  Virology       Date:  2013-01-05       Impact factor: 3.616

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