| Literature DB >> 29861451 |
Zhenning Mei1, Xian Zhao2, Hongyu Chen3, Wei Chen4,5.
Abstract
Complexity science has provided new perspectives and opportunities for understanding a variety of complex natural or social phenomena, including brain dysfunctions like epilepsy. By delving into the complexity in electrophysiological signals and neuroimaging, new insights have emerged. These discoveries have revealed that complexity is a fundamental aspect of physiological processes. The inherent nonlinearity and non-stationarity of physiological processes limits the methods based on simpler underlying assumptions to point out the pathway to a more comprehensive understanding of their behavior and relation with certain diseases. The perspective of complexity may benefit both the research and clinical practice through providing novel data analytics tools devoted for the understanding of and the intervention about epilepsies. This review aims to provide a sketchy overview of the methods derived from different disciplines lucubrating to the complexity of bio-signals in the field of epilepsy monitoring. Although the complexity of bio-signals is still not fully understood, bundles of new insights have been already obtained. Despite the promising results about epileptic seizure detection and prediction through offline analysis, we are still lacking robust, tried-and-true real-time applications. Multidisciplinary collaborations and more high-quality data accessible to the whole community are needed for reproducible research and the development of such applications.Entities:
Keywords: complex network; epileptic seizure; machine learning; non-stationary signal processing; nonlinear dynamics
Mesh:
Year: 2018 PMID: 29861451 PMCID: PMC6022076 DOI: 10.3390/s18061720
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.576
Figure 1Recommendation of epilepsy and epilepsy syndromes by ILAE.
Figure 2Time-frequency Distribution of Non-stationary Signals: (a,b) Two signals with frequency components that vary with time; (c,e) Welch power spectrum density estimation and time frequency distribution of the signal in (a); (d,f) Welch power spectrum density estimation and time frequency distribution of the signal in (b).
Epileptic Seizure Monitoring using Non-stationary Signal Processing (Sen: Sensitivity. Spec: Specificity. FDR: False detection rate. “*” indicates nonpublic dataset. LDA: linear discriminative analysis. LR: logistic regression. Bonn, Freiburg, EPILEPSIAE:abbreviations of datasets).
| Author (Year) [Reference] | Signal | Dataset | Features | Classifier/Methods | Results |
|---|---|---|---|---|---|
| M. Roessgen et al. (1998) [ | EEG | EEG from 2 babies * | Model parameters | -- | Highly reduced FDR |
| Patrick Celka et al. (2002) [ | EEG | EEG from 4 babies | Singular values and minimum description length | Simple thresholding | >93% detection rate and <4% FDR |
| Greene et al. (2007) [ | ECG | ECG signal from 7 neonates having 520 seizure events * | Time domain, frequency domain and time-frequency domain features | LDA | 62.2% Sen, 71.8% Spec |
| A. T. Tzallas et al. (2009) [ | EEG | Bonn | Power spectral features from 12 time-frequency distributions | ANN | 89–100% Sen, 89.1–100% Spec across different tasks |
| S. M. Shafiul Alam et al. (2013) [ | EEG | Bonn | Higher order statistics in EMD domain | ANN | 100% Acc |
| Nagaraj et al. (2014) [ | EEG | 826 h EEG from 18 full-term neonates with 1389 seizures * | Relative structural complexity | Simple thresholding | 0.91 Area under the curve (AUC) |
| K. Samiee et al. (2015) [ | EEG | Bonn | Spectral coefficients with their statistical values | Naive Bayes/LR/SVM/K-NN/ANN | 98.8% Sen, 97.2% Spec, 98.3% Acc |
| Shasha Yuan et al. (2016) [ | EEG | Freiburg | Residual error after reconstruction | Simple thresholding | 95.11% Sen, 98.78% Spec |
| Boashash et al. (2016) [ | EEG | EEG from 36 sick newborns * | Feature set extracted from TFD | Random forests/SVM/ANN | 86.61% accuracy |
| Marwa Qaraqe et al. (2016) [ | EEG/ECG | EPILEPSIAE | Skewness of original signal, mean and standard deviation of TFD | SVM | 100% Sen with varied false alarm rate due to different specifications of model |
| Fujiwara et al. (2016) [ | ECG | ECG signal from 14 patients (metadata reported) * | HRV-based features | Multivariate process control | 91% Sen, 0.7 times/h FDR (Prediction) |
| P. Thodoroff et.al (2016) [ | EEG | CHB-MIT | Image representation of EEG integrating spatial information | Recurrent neural network | Higher Sen, lower FDR |
| R. Ahmed et al. (2017) [ | EEG | 261 h EEG from 17 neonates with 821 seizures * | Time and frequency domain features and entropy measures | SVM-(modified kernel)/RBF-SVM | 82.6% Sen and 90% Spec after post-processing |
| U. R. Acharya et al. (2017) [ | EEG | Bonn | -- | DCNN (13 layers) | 95% Sen, 90% Spec, 88.67% Acc |
| Ye Yuan et al. (2017) [ | EEG | CHB-MIT | Short-time Fourier transform | mSSDA/softmax | 93.82% Acc |
| I. K. Kornek (2018) [ | EEG | Intracranial EEG from 15 patients with 2817 seizures | Time-frequency representation | Deep neural network | 42% Sen surpassing random predictor |
Epileptic Seizure Monitoring using Nonlinear Dynamics (Sen: Sensitivity. Spec: Specificity. FDR: False detection rate. “*” indicates nonpublic dataset. CD: correlation dimension. LLE: largest Lyapunov exponent. ANFIS: adaptive neuro fuzzy inference system).
| Author (Year) [Reference] | Signal | Dataset | Features | Classifier/Methods | Results |
|---|---|---|---|---|---|
| N. Kannathal et al. (2005) [ | EEG | Bonn | Kolmogorov entropy/Spectral entropy/Renyi entropy/Approximate entropy; | ANFIS | 91.49–93.02% Sen |
| H. Adeli et al. (2007) [ | EEG | Bonn | CD/LLE | -- | CD is distinct in beta and gamma band while LLE is distinct in alpha band |
| Ocak et al. (2009) [ | EEG | Bonn | Approximate entropy | Statistical analysis | 96% accuracy |
| Lin Guo et al. (2010) [ | EEG | Bonn | Approximate entropy | ANN | 98.27% accuracy |
| Polychronaki et al. (2010) [ | EEG | 553 h EEG from 8 patients with 55 seizures (metadata reported) * | Fractal dimension | Simple thresholding | 100% Sen, 0.42 times/h FDR |
| Sheng Fu Liang et al. (2010) [ | EEG | Bonn | Approximate entropy and frequency domain features | LDA/SVM/ANN/ | 97.82–98.51% accuracy, (seizure/non-seizure) |
| C.C. Jouny et al. (2012) [ | EEG | Intracranial EEG from 45 patients | Bundles of frequency-based and complexity-based features | -- | Gabor atom density, Lempel-Ziv complexity, Higuchi fractal dimension, high frequency activity, sample entropy were more reliable to assess early seizure onset |
| Labate et al. (2013) [ | EEG | EEG collected from 22 patients and 35 healthy controls * | Multiscale permutation entropy | SVM | 77–88% Sen, 55–87% Spec |
| Conigliaro et al. (2014) [ | EEG | 8 h EEG * | Multiscale sample entropy and spectral features | SVM | 89–99% accuracy across 5 patients with TLE |
| Jesper Jeppesen et al. (2015) [ | ECG | ECG from 17 patients with 17 seizures | Heart rate variability based features | Simple thresholding | Modified Cardiac Sympathetic Index (mCSI) performs well, 13 of 17 seizures are detected |
| Yueming Wang et al. (2016) [ | EEG | CHB-MIT and 331 h EEG from 9 patients with 9 seizures * | Sample entropy and other morphological features | State space model | 89% Sen and 0.48 times/h FDR on CHB-MIT database; 100% Sen and 0.08 times/h FDR on private dataset. |
| P. Li et al. (2016) [ | EEG | Bonn | Distribution entropy and sample entropy | Statistical analysis | 0.93–0.97 AUC for sample entropy; 0.66–0.87 AUC for distribution entropy but with higher robustness for short length data |
Epileptic Seizure Monitoring inspired by Network Science (Sen: Sensitivity. Spec: Specificity. FDR: False detection rate. “*” indicates nonpublic dataset).
| Author (Year) [Reference] | Signal | Dataset | Methodology | Results and Discoveries |
|---|---|---|---|---|
| S. C. Ponten et al. (2007) [ | EEG | Intracerebral EEG from 7 patients | Synchronization likelihood based abstract network construction | The abstract brain network tends to a more ordered configuration during seizure activities, with higher clustering coefficient and larger shortest path length |
| G. J. Ortega et al. (2008) [ | ECoG | ECoG from 5 patients | Minimum spanning tree on correlation matrix deployed as a metric of connectivity | Regions identified by complex network analysis that with higher local synchronization power is related to the development of epileptic seizure |
| van Dellen et al. (2009) [ | ECoG | ECoG from 27 patients | Phase lag index is used to construct the functional brain network | Averaged PLI, clustering coefficient are negatively correlated with the duration of TLE. |
| Linda Douw et al. (2010) [ | MEG | 17 patients and 12 of them at two time points | Phase lag index is used to construct the functional brain network | Altered functional connectivity and less optimal brain network topology in patients. Increased theta band connectivity is related to larger number of seizures |
| Christopher Wilke et al. (2011) [ | ECoG | ECoG from 25 patients | Directed transfer function are used to construct the connection of brain network | The betweenness centrality is probably indicative of epileptogenic zone. Such correlations are frequency dependent. |
| Zhu Guohun et al. (2014) [ | EEG | Bonn | Mean degree and mean strength | 93–100% accuracy across different tasks |
| C. L. Yasuda et al. (2015) [ | MRI | 86 patients with left TLE, 70 patients with right TLE and 116 healthy controls | Pearson correlations are used to construct the structural brain network | Decreased global efficiency and increased local efficiency were observed in TLE group |
| W. Beilei and L. Meng (2016) [ | MEG | MEG from 20 patients and 20 health controls | Phase lag index is used to construct the functional brain network | Frequency-dependent alteration of the metrics of brain network in patients with epilepsy was observed |
| Diykh et al. (2016) [ | EEG | Bonn | Modularity, closeness centrality, clustering coefficient, average shortest path length | 97% Sen, 99% Spec, 98% accuracy |
| Wang Lei et al. (2017) [ | EEG | 615 h EEG from 29 patients with 91 seizures * | Degree entropy and six features based on wavelet analysis | 38% Sen for combined, higher than 24% when only use wavelet-based features. |
Figure 3Automatic seizure monitoring by machine learning techniques.
Public-available datasets for the research about automatic seizure monitoring (SF: sampling frequency. ADC: analog-to-digit converter. ECoG: Electrocorticogram).
| Database | Basic Description | Metadata | Label | Scale |
|---|---|---|---|---|
| Bonn Seizure Database | 5 groups of single channel EEG recordings. SF is 173.6 Hz and the bandwidth of raw data is 0.53–85 Hz. | 5 patients and 5 healthy controls. No more details. | Normal(A,B)/Ictal (E)/Inter-ictal(C,D) | Each group with 100 records and each record with a length of 23.6 s (4096 data points). |
| CHB-MIT Scalp EEG Database | Multichannel (23, 24 or 26) EEG from 22 patients with SF of 256 Hz and 16 bit ADC. Protected health information (PHI) of patients has been masked. | 17 females, ages 1.5–19. 5 males, ages 3–22. | Start time and end time (accurate to second). | 24 cases with 664 files in total, among which 129 files contain 198 seizures. |
| Flint Hills Scientific L.L.C. | Multichannel (48–64) ECoG with SF of 249 Hz. | 10 patients | Start time and end time | 1419 h, 59 seizures |
| Freiburg | Multichannel long-term ECoG collected from 21 patients with medical intractable epilepsy by grid-, strip- and depth electrodes. SF is 256 Hz and 16 bit ADC is applied. | Ages (8 males, 13 females), seizure types, durations are available. | Start time and end time (accurate to second). | 87 seizures in total. For records contain seizure, at least 50 min pre-ictal data are provided. |
| European Epilepsy Database | Both surface and intracranial multichannel EEG from more than 250 patients (60 available now) in three centers (Coimbra, Paris and Freiburg). SF ranges from 250 to 2500 Hz. | Clinical patient information and (most of) MRI data. | Well annotated by EEG experts with supplementary metadata. | 40,000+ h, 2400+ seizures. For each patient, more than 150 h continuous EEG data provided. |
| U Penn & Mayo Clinic’s Seizure Detection | Intracranial EEG from 4 dogs and 8 patients suffering from drug-resistant epilepsy. 16 channels and a SF of 400 Hz for dogs. 16–72 channels and SF of 500/5000 Hz for patients. | Gender, age and epileptic zone for patients. | Inter-ictal/Ictal | 58,837 clips (25,922 in training set/32,915 in test set). 1 s of length for each clip. |
| U Penn & Mayo Clinic’s Seizure Prediction | Intracranial EEG from 5 dogs and 2 patients. 16 channels and a SF of 400 Hz for dogs. 15 channels and SF of 5000 Hz for patients. | Gender, age and the arrangement of electrodes. | Inter-ictal/Preictal Events annotated | 8002 clips (4067 in training set/3935 in test set). 10 min of length for each clip. |
| THU EEG Seizure Corpus | Multichannel (24–36) EEG with a SF of 250 Hz. | Patient’s clinical history and medications | Medical records available | 16,986 sessions from 10,874 unique subjects |
Application of non-EEG based wearable sensor system in Epileptic Seizure Monitoring.
| Author (Year) [Reference] | Modality | Methods and Features | Results and Discoveries |
|---|---|---|---|
| T. M. E. Nijsen et al. (2005) [ | Acceleration | Modulus of three axis acceleration | Acceleration detected 428/897 seizures along and 10/18 patients’ seizures can all be detected by acceleration |
| T. M. E. Nijsen et al. (2012) [ | Acceleration | Model-based match wavelet transform of acceleration | 80% Sen, 85% Spec |
| Ming-Zher Poh et al. (2012) [ | EDG and acceleration | Hybrid features and SVM as classifier | 15 of 16 generalized tonic clonic seizures (GTCS) are detected from >4213 h recordings from 80 patients with false alarm rate about 0.74 times per day |
| C. A. Szab (2015) [ | sEMG | Brain Sentinel’s algorithm | 20 of 21 GTCS are detected in 11 patients from 1399 h’s recording from 33 patients |
| Milosevic et al. (2016) [ | sEMG and acceleration | Hybrid features and SVM as classifier | Multimodal method outperforms any of unimodal methods, 90.91% Sen, 0.45 FDR/12 h |