Literature DB >> 28459961

Crowdsourcing seizure detection: algorithm development and validation on human implanted device recordings.

Steven N Baldassano1,2, Benjamin H Brinkmann3,4, Hoameng Ung1,2, Tyler Blevins1,2, Erin C Conrad5, Kent Leyde6, Mark J Cook7,8, Ankit N Khambhati1,2, Joost B Wagenaar2,5, Gregory A Worrell3,4, Brian Litt1,2,5.   

Abstract

There exist significant clinical and basic research needs for accurate, automated seizure detection algorithms. These algorithms have translational potential in responsive neurostimulation devices and in automatic parsing of continuous intracranial electroencephalography data. An important barrier to developing accurate, validated algorithms for seizure detection is limited access to high-quality, expertly annotated seizure data from prolonged recordings. To overcome this, we hosted a kaggle.com competition to crowdsource the development of seizure detection algorithms using intracranial electroencephalography from canines and humans with epilepsy. The top three performing algorithms from the contest were then validated on out-of-sample patient data including standard clinical data and continuous ambulatory human data obtained over several years using the implantable NeuroVista seizure advisory system. Two hundred teams of data scientists from all over the world participated in the kaggle.com competition. The top performing teams submitted highly accurate algorithms with consistent performance in the out-of-sample validation study. The performance of these seizure detection algorithms, achieved using freely available code and data, sets a new reproducible benchmark for personalized seizure detection. We have also shared a 'plug and play' pipeline to allow other researchers to easily use these algorithms on their own datasets. The success of this competition demonstrates how sharing code and high quality data results in the creation of powerful translational tools with significant potential to impact patient care.
© The Author (2017). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  crowdsourcing; epilepsy; experimental models; intracranial EEG; seizure detection

Mesh:

Year:  2017        PMID: 28459961      PMCID: PMC6075622          DOI: 10.1093/brain/awx098

Source DB:  PubMed          Journal:  Brain        ISSN: 0006-8950            Impact factor:   13.501


  41 in total

1.  A novel implanted device to wirelessly record and analyze continuous intracranial canine EEG.

Authors:  Kathryn A Davis; Beverly K Sturges; Charles H Vite; Vanessa Ruedebusch; Gregory Worrell; Andrew B Gardner; Kent Leyde; W Douglas Sheffield; Brian Litt
Journal:  Epilepsy Res       Date:  2011-06-14       Impact factor: 3.045

2.  Efficient unsupervised algorithms for the detection of seizures in continuous EEG recordings from rats after brain injury.

Authors:  Andrew M White; Philip A Williams; Damien J Ferraro; Suzanne Clark; Shilpa D Kadam; F Edward Dudek; Kevin J Staley
Journal:  J Neurosci Methods       Date:  2005-12-05       Impact factor: 2.390

Review 3.  Integration of EEG, MRI, and SPECT in localizing the seizure focus for epilepsy surgery.

Authors:  E L So
Journal:  Epilepsia       Date:  2000       Impact factor: 5.864

4.  Automatic seizure detection in EEG using logistic regression and artificial neural network.

Authors:  Ahmet Alkan; Etem Koklukaya; Abdulhamit Subasi
Journal:  J Neurosci Methods       Date:  2005-07-14       Impact factor: 2.390

Review 5.  Responsive cortical stimulation for the treatment of epilepsy.

Authors:  Felice T Sun; Martha J Morrell; Robert E Wharen
Journal:  Neurotherapeutics       Date:  2008-01       Impact factor: 7.620

Review 6.  Seizure detection, seizure prediction, and closed-loop warning systems in epilepsy.

Authors:  Sriram Ramgopal; Sigride Thome-Souza; Michele Jackson; Navah Ester Kadish; Iván Sánchez Fernández; Jacquelyn Klehm; William Bosl; Claus Reinsberger; Steven Schachter; Tobias Loddenkemper
Journal:  Epilepsy Behav       Date:  2014-08-29       Impact factor: 2.937

7.  A multistage, multimethod approach for automatic detection and classification of epileptiform EEG.

Authors:  He Sheng Liu; Tong Zhang; Fu Sheng Yang
Journal:  IEEE Trans Biomed Eng       Date:  2002-12       Impact factor: 4.538

8.  Automatic recognition of epileptic seizures in the EEG.

Authors:  J Gotman
Journal:  Electroencephalogr Clin Neurophysiol       Date:  1982-11

9.  Mining continuous intracranial EEG in focal canine epilepsy: Relating interictal bursts to seizure onsets.

Authors:  Kathryn A Davis; Hoameng Ung; Drausin Wulsin; Joost Wagenaar; Emily Fox; Ned Patterson; Charles Vite; Gregory Worrell; Brian Litt
Journal:  Epilepsia       Date:  2015-11-26       Impact factor: 5.864

10.  Chronic anterior thalamus stimulation for intractable epilepsy.

Authors:  Mojgan Hodaie; Richard A Wennberg; Jonathan O Dostrovsky; Andres M Lozano
Journal:  Epilepsia       Date:  2002-06       Impact factor: 5.864

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  28 in total

1.  Cloud computing for seizure detection in implanted neural devices.

Authors:  Steven Baldassano; Xuelong Zhao; Benjamin Brinkmann; Vaclav Kremen; John Bernabei; Mark Cook; Timothy Denison; Gregory Worrell; Brian Litt
Journal:  J Neural Eng       Date:  2018-12-18       Impact factor: 5.379

2.  SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses.

Authors:  Adriana Tomic; Ivan Tomic; Yael Rosenberg-Hasson; Cornelia L Dekker; Holden T Maecker; Mark M Davis
Journal:  J Immunol       Date:  2019-06-14       Impact factor: 5.422

3.  Circadian Profile and Seizure Forecasting: Still Cloudy but With Chance for Sunshine.

Authors:  Jong Woo Lee
Journal:  Epilepsy Curr       Date:  2018 Jan-Feb       Impact factor: 7.500

4.  Long-Term Patterns of Seizure Recurrence: Estimating Risk From Ambulatory Intracranial EEG Recordings.

Authors:  Bernard S Chang
Journal:  Epilepsy Curr       Date:  2018 Jul-Aug       Impact factor: 7.500

5.  Epileptic Seizure Detection on an Ultra-Low-Power Embedded RISC-V Processor Using a Convolutional Neural Network.

Authors:  Andreas Bahr; Matthias Schneider; Maria Avitha Francis; Hendrik M Lehmann; Igor Barg; Anna-Sophia Buschhoff; Peer Wulff; Thomas Strunskus; Franz Faupel
Journal:  Biosensors (Basel)       Date:  2021-06-23

6.  Early Detection of Human Epileptic Seizures Based on Intracortical Microelectrode Array Signals.

Authors:  Yun S Park; G Rees Cosgrove; Joseph R Madsen; Emad N Eskandar; Leigh R Hochberg; Sydney S Cash; Wilson Truccolo
Journal:  IEEE Trans Biomed Eng       Date:  2019-06-06       Impact factor: 4.538

7.  When the Waves Become Rainbows: Improving Seizure Detection in the Pediatric ICU.

Authors:  Mohamad Koubeissi
Journal:  Epilepsy Curr       Date:  2018 Mar-Apr       Impact factor: 7.500

8.  Prediction of Seizure Recurrence. A Note of Caution.

Authors:  William J Bosl; Alan Leviton; Tobias Loddenkemper
Journal:  Front Neurol       Date:  2021-05-13       Impact factor: 4.003

Review 9.  Seizure Diaries and Forecasting With Wearables: Epilepsy Monitoring Outside the Clinic.

Authors:  Benjamin H Brinkmann; Philippa J Karoly; Ewan S Nurse; Sonya B Dumanis; Mona Nasseri; Pedro F Viana; Andreas Schulze-Bonhage; Dean R Freestone; Greg Worrell; Mark P Richardson; Mark J Cook
Journal:  Front Neurol       Date:  2021-07-13       Impact factor: 4.003

10.  A Full-Stack Application for Detecting Seizures and Reducing Data During Continuous Electroencephalogram Monitoring.

Authors:  John M Bernabei; Olaoluwa Owoputi; Shyon D Small; Nathaniel T Nyema; Elom Dumenyo; Joongwon Kim; Steven N Baldassano; Christopher Painter; Erin C Conrad; Taneeta M Ganguly; Ramani Balu; Kathryn A Davis; Joshua M Levine; Jay Pathmanathan; Brian Litt
Journal:  Crit Care Explor       Date:  2021-07-13
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