Literature DB >> 2984684

Sequence analysis of hepatitis A virus cDNA coding for capsid proteins and RNA polymerase.

B M Baroudy, J R Ticehurst, T A Miele, J V Maizel, R H Purcell, S M Feinstone.   

Abstract

We report here the nucleotide sequence corresponding to two large regions of the hepatitis A virus (HAV) genome. These comprise a sequence of 3274 bases corresponding to the 5' end of the genome, which includes the putative capsid protein region of this picornavirus, and 1590 bases corresponding to the 3' end of the genome, terminating in a 15-base poly(A) tract. These sequences revealed that HAV had the characteristic genomic organization of picornaviruses: an open reading frame beginning approximately 750 bases from the 5' end of the RNA and a termination codon 60 bases from the 3' poly(A) tract. The predicted amino acid sequences of both regions have been compared to analogous regions previously determined for other picornaviruses. There was sufficient homology to conclude that the 5' region of HAV codes for capsid proteins and that the 3' region codes for an RNA polymerase. However, these regions of HAV were not found to be closely related to analogous regions of poliovirus, encephalomyocarditis virus, and foot and mouth disease virus.

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Year:  1985        PMID: 2984684      PMCID: PMC397509          DOI: 10.1073/pnas.82.7.2143

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  3'-end labeling of DNA with [alpha-32P]cordycepin-5'-triphosphate.

Authors:  C P Tu; S N Cohen
Journal:  Gene       Date:  1980-07       Impact factor: 3.688

2.  Complete nucleotide sequences of all three poliovirus serotype genomes. Implication for genetic relationship, gene function and antigenic determinants.

Authors:  H Toyoda; M Kohara; Y Kataoka; T Suganuma; T Omata; N Imura; A Nomoto
Journal:  J Mol Biol       Date:  1984-04-25       Impact factor: 5.469

3.  Relationship of human rhinovirus strain 2 and poliovirus as indicated by comparison of the polymerase gene regions.

Authors:  T Skern; W Sommergruber; D Blaas; C Pieler; E Kuechler
Journal:  Virology       Date:  1984-07-15       Impact factor: 3.616

4.  Cloned poliovirus complementary DNA is infectious in mammalian cells.

Authors:  V R Racaniello; D Baltimore
Journal:  Science       Date:  1981-11-20       Impact factor: 47.728

Review 5.  Taxonomic classification of hepatitis A virus.

Authors:  I D Gust; A G Coulepis; S M Feinstone; S A Locarnini; Y Moritsugu; R Najera; G Siegl
Journal:  Intervirology       Date:  1983       Impact factor: 1.763

6.  Systematic nomenclature of picornavirus proteins.

Authors:  R R Rueckert; E Wimmer
Journal:  J Virol       Date:  1984-06       Impact factor: 5.103

Review 7.  Picornaviral structure and assembly.

Authors:  J R Putnak; B A Phillips
Journal:  Microbiol Rev       Date:  1981-06

8.  The nucleotide and deduced amino acid sequences of the encephalomyocarditis viral polyprotein coding region.

Authors:  A C Palmenberg; E M Kirby; M R Janda; N L Drake; G M Duke; K F Potratz; M S Collett
Journal:  Nucleic Acids Res       Date:  1984-03-26       Impact factor: 16.971

9.  Molecular cloning and characterization of hepatitis A virus cDNA.

Authors:  J R Ticehurst; V R Racaniello; B M Baroudy; D Baltimore; R H Purcell; S M Feinstone
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

10.  Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses.

Authors:  G Kamer; P Argos
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

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  20 in total

1.  Expression of hepatitis A virus cDNA in Escherichia coli: antigenic VP1 recombinant protein.

Authors:  R Ostermayr; K von der Helm; V Gauss-Müller; E L Winnacker; F Deinhardt
Journal:  J Virol       Date:  1987-11       Impact factor: 5.103

Review 2.  Diagnosis of hepatitis a virus infection: a molecular approach.

Authors:  Omana V Nainan; Guoliang Xia; Gilberto Vaughan; Harold S Margolis
Journal:  Clin Microbiol Rev       Date:  2006-01       Impact factor: 26.132

3.  Characterization by T1-oligonucleotide fingerprinting of three strains of human hepatitis A virus isolated in Italy.

Authors:  L Fiore; E De Paolis; F Novello; M Divizia; A Panà
Journal:  Eur J Epidemiol       Date:  1990-03       Impact factor: 8.082

4.  The deletion of 41 proximal nucleotides reverts a poliovirus mutant containing a temperature-sensitive lesion in the 5' noncoding region of genomic RNA.

Authors:  S L Dildine; B L Semler
Journal:  J Virol       Date:  1989-02       Impact factor: 5.103

5.  Isolation and molecular cloning of a fast-growing strain of human hepatitis A virus from its double-stranded replicative form.

Authors:  A Venuti; C Di Russo; N del Grosso; A M Patti; F Ruggeri; P R De Stasio; M G Martiniello; P Pagnotti; A M Degener; M Midulla
Journal:  J Virol       Date:  1985-11       Impact factor: 5.103

6.  Combined immunoaffinity cDNA-RNA hybridization assay for detection of hepatitis A virus in clinical specimens.

Authors:  R W Jansen; J E Newbold; S M Lemon
Journal:  J Clin Microbiol       Date:  1985-12       Impact factor: 5.948

7.  Structure of the hepatitis A virion: peptide mapping of the capsid region.

Authors:  C M Wheeler; B H Robertson; G Van Nest; D Dina; D W Bradley; H A Fields
Journal:  J Virol       Date:  1986-05       Impact factor: 5.103

8.  A chimeric plasmid from cDNA clones of poliovirus and coxsackievirus produces a recombinant virus that is temperature-sensitive.

Authors:  B L Semler; V H Johnson; S Tracy
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

9.  Detection of a genome-linked protein (VPg) of hepatitis A virus and its comparison with other picornaviral VPgs.

Authors:  M Weitz; B M Baroudy; W L Maloy; J R Ticehurst; R H Purcell
Journal:  J Virol       Date:  1986-10       Impact factor: 5.103

10.  Detection of hepatitis A virus by hybridization with single-stranded RNA probes.

Authors:  X Jiang; M K Estes; T G Metcalf
Journal:  Appl Environ Microbiol       Date:  1987-10       Impact factor: 4.792

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