Literature DB >> 29790735

Sensing DNA through DNA Charge Transport.

Theodore J Zwang1, Edmund C M Tse1, Jacqueline K Barton1.   

Abstract

DNA charge transport chemistry involves the migration of charge over long molecular distances through the aromatic base pair stack within the DNA helix. This migration depends upon the intimate coupling of bases stacked one with another, and hence any perturbation in that stacking, through base modifications or protein binding, can be sensed electrically. In this review, we describe the many ways DNA charge transport chemistry has been utilized to sense changes in DNA, including the presence of lesions, mismatches, DNA-binding proteins, protein activity, and even reactions under weak magnetic fields. Charge transport chemistry is remarkable in its ability to sense the integrity of DNA.

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Year:  2018        PMID: 29790735      PMCID: PMC6080280          DOI: 10.1021/acschembio.8b00347

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  91 in total

1.  Electrical conduction through DNA molecules.

Authors:  H W Fink; C Schönenberger
Journal:  Nature       Date:  1999-04-01       Impact factor: 49.962

2.  Ultrafast dynamics in DNA-mediated electron transfer: base gating and the role of temperature.

Authors:  Melanie A O'Neill; Hans-Christian Becker; Chaozhi Wan; Jacqueline K Barton; Ahmed H Zewail
Journal:  Angew Chem Int Ed Engl       Date:  2003       Impact factor: 15.336

3.  Electrochemical interrogation of conformational changes as a reagentless method for the sequence-specific detection of DNA.

Authors:  Chunhai Fan; Kevin W Plaxco; Alan J Heeger
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-16       Impact factor: 11.205

4.  Rates of DNA-mediated electron transfer between metallointercalators.

Authors:  M R Arkin; E D Stemp; R E Holmlin; J K Barton; A Hörmann; E J Olson; P F Barbara
Journal:  Science       Date:  1996-07-26       Impact factor: 47.728

5.  Temperature dependence of electrochemical DNA charge transport: influence of a mismatch.

Authors:  Chris H Wohlgamuth; Marc A McWilliams; Jason D Slinker
Journal:  Anal Chem       Date:  2013-01-08       Impact factor: 6.986

6.  Redox Signaling through DNA.

Authors:  Elizabeth O'Brien; Rebekah M B Silva; Jacqueline K Barton
Journal:  Isr J Chem       Date:  2016-07-29       Impact factor: 3.333

7.  A Redox Role for the [4Fe4S] Cluster of Yeast DNA Polymerase δ.

Authors:  Phillip L Bartels; Joseph L Stodola; Peter M J Burgers; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2017-12-06       Impact factor: 15.419

8.  DNA charge transport over 34 nm.

Authors:  Jason D Slinker; Natalie B Muren; Sara E Renfrew; Jacqueline K Barton
Journal:  Nat Chem       Date:  2011-01-30       Impact factor: 24.427

9.  Electrical Probes of DNA-Binding Proteins.

Authors:  Jacqueline K Barton; Phillip L Bartels; Yingxin Deng; Elizabeth O'Brien
Journal:  Methods Enzymol       Date:  2017-05-10       Impact factor: 1.600

10.  Multiplexed DNA-modified electrodes.

Authors:  Jason D Slinker; Natalie B Muren; Alon A Gorodetsky; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

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  13 in total

Review 1.  Exploring the Trans-Cleavage Activity of CRISPR-Cas12a (cpf1) for the Development of a Universal Electrochemical Biosensor.

Authors:  Yifan Dai; Rodrigo A Somoza; Liu Wang; Jean F Welter; Yan Li; Arnold I Caplan; Chung Chiun Liu
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-17       Impact factor: 15.336

Review 2.  When you're strange: Unusual features of the MUTYH glycosylase and implications in cancer.

Authors:  Alan G Raetz; Sheila S David
Journal:  DNA Repair (Amst)       Date:  2019-06-08

3.  Positional Dependence of DNA Hole Transfer Efficiency in Nucleosome Core Particles.

Authors:  Huabing Sun; Liwei Zheng; Kun Yang; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2019-06-25       Impact factor: 15.419

Review 4.  Why Are DNA and Protein Electron Transfer So Different?

Authors:  David N Beratan
Journal:  Annu Rev Phys Chem       Date:  2019-02-06       Impact factor: 12.703

Review 5.  Telomere Length Regulation.

Authors:  Peter Lansdorp
Journal:  Front Oncol       Date:  2022-07-04       Impact factor: 5.738

6.  Effective Distance for DNA-Mediated Charge Transport between Repair Proteins.

Authors:  Edmund C M Tse; Theodore J Zwang; Sebastian Bedoya; Jacqueline K Barton
Journal:  ACS Cent Sci       Date:  2019-01-11       Impact factor: 14.553

7.  Direct Detection and Discrimination of Nucleotide Polymorphisms Using Anthraquinone Labeled DNA Probes.

Authors:  Sarah A Goodchild; Rachel Gao; Daniel P Shenton; Alastair J S McIntosh; Tom Brown; Philip N Bartlett
Journal:  Front Chem       Date:  2020-05-12       Impact factor: 5.221

Review 8.  The Dynamics of Hole Transfer in DNA.

Authors:  Andrea Peluso; Tonino Caruso; Alessandro Landi; Amedeo Capobianco
Journal:  Molecules       Date:  2019-11-07       Impact factor: 4.411

9.  Multilayer 3D Chirality and Its Synthetic Assembly.

Authors:  Guanzhao Wu; Yangxue Liu; Zhen Yang; Nandakumar Katakam; Hossein Rouh; Sultan Ahmed; Daniel Unruh; Kazimierz Surowiec; Guigen Li
Journal:  Research (Wash D C)       Date:  2019-06-27

10.  Spatial Separation of Plasmonic Hot-Electron Generation and a Hydrodehalogenation Reaction Center Using a DNA Wire.

Authors:  Sergio Kogikoski; Anushree Dutta; Ilko Bald
Journal:  ACS Nano       Date:  2021-12-07       Impact factor: 15.881

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