Literature DB >> 30726186

Why Are DNA and Protein Electron Transfer So Different?

David N Beratan1,2.   

Abstract

The corpus of electron transfer (ET) theory provides considerable power to describe the kinetics and dynamics of electron flow at the nanoscale. How is it, then, that nucleic acid (NA) ET continues to surprise, while protein-mediated ET is relatively free of mechanistic bombshells? I suggest that this difference originates in the distinct electronic energy landscapes for the two classes of reactions. In proteins, the donor/acceptor-to-bridge energy gap is typically several-fold larger than in NAs. NA ET can access tunneling, hopping, and resonant transport among the bases, and fluctuations can enable switching among mechanisms; protein ET is restricted to tunneling among redox active cofactors and, under strongly oxidizing conditions, a few privileged amino acid side chains. This review aims to provide conceptual unity to DNA and protein ET reaction mechanisms. The establishment of a unified mechanistic framework enabled the successful design of NA experiments that switch electronic coherence effects on and off for ET processes on a length scale of multiple nanometers and promises to provide inroads to directing and detecting charge flow in soft-wet matter.

Entities:  

Keywords:  electron transfer; flickering resonance; hopping; polaron; superexchange

Mesh:

Substances:

Year:  2019        PMID: 30726186      PMCID: PMC6591729          DOI: 10.1146/annurev-physchem-042018-052353

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  91 in total

1.  Long-range charge hopping in DNA.

Authors:  M Bixon; B Giese; S Wessely; T Langenbacher; M E Michel-Beyerle; J Jortner
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  Dynamics of photoinduced charge transfer and hole transport in synthetic DNA hairpins.

Authors:  F D Lewis; R L Letsinger; M R Wasielewski
Journal:  Acc Chem Res       Date:  2001-02       Impact factor: 22.384

3.  Polarons in DNA.

Authors:  E M Conwell; S V Rakhmanova
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

Review 4.  Long-range charge transfer in DNA: transient structural distortions control the distance dependence.

Authors:  G B Schuster
Journal:  Acc Chem Res       Date:  2000-04       Impact factor: 22.384

Review 5.  What controls the rates of interprotein electron-transfer reactions.

Authors:  V L Davidson
Journal:  Acc Chem Res       Date:  2000-02       Impact factor: 22.384

6.  Dynamically controlled protein tunneling paths in photosynthetic reaction centers.

Authors:  I A Balabin; J N Onuchic
Journal:  Science       Date:  2000-10-06       Impact factor: 47.728

7.  Femtosecond direct observation of charge transfer between bases in DNA.

Authors:  C Wan; T Fiebig; O Schiemann; J K Barton; A H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

8.  Long-distance charge transport in DNA: the hopping mechanism.

Authors:  B Giese
Journal:  Acc Chem Res       Date:  2000-09       Impact factor: 22.384

9.  Femtosecond dynamics of DNA-mediated electron transfer.

Authors:  C Wan; T Fiebig; S O Kelley; C R Treadway; J K Barton; A H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

Review 10.  Long-distance electron transfer through DNA.

Authors:  Bernd Giese
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

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  11 in total

1.  Revisiting the Hole Size in Double Helical DNA with Localized Orbital Scaling Corrections.

Authors:  Ye Jin; Xuyan Ru; Neil Qiang Su; Yuncai Mei; David N Beratan; Peng Zhang; Weitao Yang
Journal:  J Phys Chem B       Date:  2020-04-13       Impact factor: 2.991

2.  Correlation between Charge Transport and Base Excision Repair in the MutY-DNA Glycosylase.

Authors:  Ruijie D Teo; Xiaochen Du; Héctor Luis Torres Vera; Agostino Migliore; David N Beratan
Journal:  J Phys Chem B       Date:  2020-12-28       Impact factor: 2.991

3.  Voltage-induced long-range coherent electron transfer through organic molecules.

Authors:  Karen Michaeli; David N Beratan; David H Waldeck; Ron Naaman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-07       Impact factor: 11.205

4.  Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy.

Authors:  Jan Berger; Martin Ondráček; Oleksandr Stetsovych; Pavel Malý; Petr Holý; Jiří Rybáček; Martin Švec; Irena G Stará; Tomáš Mančal; Ivo Starý; Pavel Jelínek
Journal:  Nat Commun       Date:  2020-03-12       Impact factor: 14.919

5.  Can One Define the Conductance of Amino Acids?

Authors:  Linda A Zotti; Beatrice Bednarz; Juan Hurtado-Gallego; Damien Cabosart; Gabino Rubio-Bollinger; Nicolas Agrait; Herre S J van der Zant
Journal:  Biomolecules       Date:  2019-10-07

6.  Controlling the nonadiabatic electron-transfer reaction rate through molecular-vibration polaritons in the ultrastrong coupling regime.

Authors:  Nguyen Thanh Phuc; Pham Quang Trung; Akihito Ishizaki
Journal:  Sci Rep       Date:  2020-04-30       Impact factor: 4.379

7.  Electronic spin separation induced by nuclear motion near conical intersections.

Authors:  Yanze Wu; Joseph E Subotnik
Journal:  Nat Commun       Date:  2021-01-29       Impact factor: 14.919

8.  Directed Electron Transfer in Flavin Peptides with Oligoproline-Type Helical Conformation as Models for Flavin-Functional Proteins.

Authors:  Samantha Wörner; Julia Leier; Nadine C Michenfelder; Andreas-Neil Unterreiner; Hans-Achim Wagenknecht
Journal:  ChemistryOpen       Date:  2020-12-11       Impact factor: 2.911

9.  What Can We Learn from Protein-Based Electron Transport Junctions?

Authors:  David Cahen; Israel Pecht; Mordechai Sheves
Journal:  J Phys Chem Lett       Date:  2021-12-02       Impact factor: 6.475

10.  Spatial Separation of Plasmonic Hot-Electron Generation and a Hydrodehalogenation Reaction Center Using a DNA Wire.

Authors:  Sergio Kogikoski; Anushree Dutta; Ilko Bald
Journal:  ACS Nano       Date:  2021-12-07       Impact factor: 15.881

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