Literature DB >> 28645377

Electrical Probes of DNA-Binding Proteins.

Jacqueline K Barton1, Phillip L Bartels2, Yingxin Deng2, Elizabeth O'Brien2.   

Abstract

A DNA electrochemistry platform has been developed to probe proteins bound to DNA electrically. Here gold electrodes are modified with thiol-modified DNA, and DNA charge transport chemistry is used to probe DNA binding and enzymatic reaction both with redox-silent and redox-active proteins. For redox-active proteins, the electrochemistry permits the determination of redox potentials in the DNA-bound form, where comparisons to DNA-free potentials can be made using graphite electrodes without DNA modification. Importantly, electrochemistry on the DNA-modified electrodes facilitates reaction under aqueous, physiological conditions with a sensitive electrical measurement of binding and activity.
© 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Base excision repair; Base flipping; DNA alkylation repair; DNA binding; DNA glycosylase; DNA modification; Kinetic simulation; Nucleotide flipping; Stopped flow; Transient kinetics

Mesh:

Substances:

Year:  2017        PMID: 28645377      PMCID: PMC6314295          DOI: 10.1016/bs.mie.2017.03.024

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  2 in total

Review 1.  Sensing DNA through DNA Charge Transport.

Authors:  Theodore J Zwang; Edmund C M Tse; Jacqueline K Barton
Journal:  ACS Chem Biol       Date:  2018-06-01       Impact factor: 5.100

2.  Fe-S Clusters and MutY Base Excision Repair Glycosylases: Purification, Kinetics, and DNA Affinity Measurements.

Authors:  Nicole N Nuñez; Chandrima Majumdar; Kori T Lay; Sheila S David
Journal:  Methods Enzymol       Date:  2018-01-10       Impact factor: 1.600

  2 in total

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