Literature DB >> 18157807

Long-range 19F-15N distance measurements in highly-13C, 15N-enriched solid proteins with 19F-dephased REDOR shift (FRESH) spectroscopy.

Daniel T Graesser1, Benjamin J Wylie, Andrew J Nieuwkoop, W Trent Franks, Chad M Rienstra.   

Abstract

We present a novel rotational-echo double resonance (REDOR) method for detection of multiple (19)F-(15)N distances in solid proteins. The method is applicable to protein samples containing a single (19)F label, in addition to high levels of (13)C and (15)N enrichment. REDOR dephasing pulses are applied on the (19)F channel during an indirect constant time chemical shift evolution period on (15)N, and polarization is then transferred to (13)C for detection, with high-power (1)H decoupling throughout the sequence. This four-channel experiment reports site-specifically on (19)F-(15)N distances, with highly accurate determinations of approximately 5 A distances and detection of correlations arising from internuclear distances of at least 8 A. We demonstrate the method on the well-characterized 56-residue model protein GB1, where the sole tryptophan residue (Trp-43) has been labeled with 5-(19)F-Trp, in a bacterial growth medium also including (13)C-glucose and (15)N ammonium chloride. In GB1, 11 distances are determined, all agreeing within 20% of the X-ray structure distances. We envision the experiment will be utilized to measure quantitative long-range distances for protein structure determination. 2007 John Wiley & Sons, Ltd

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Year:  2007        PMID: 18157807     DOI: 10.1002/mrc.2126

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  10 in total

1.  NMR investigation of the role of osteocalcin and osteopontin at the organic-inorganic interface in bone.

Authors:  Ondřej Nikel; Danielle Laurencin; Scott A McCallum; Caren M Gundberg; Deepak Vashishth
Journal:  Langmuir       Date:  2013-11-01       Impact factor: 3.882

2.  31P-dephased, 13C-detected REDOR for NMR crystallography at natural isotopic abundance.

Authors:  Alexander I Greenwood; Mary C Clay; Chad M Rienstra
Journal:  J Magn Reson       Date:  2017-02-28       Impact factor: 2.229

3.  Solid-state nuclear magnetic resonance measurements of HIV fusion peptide 13CO to lipid 31P proximities support similar partially inserted membrane locations of the α helical and β sheet peptide structures.

Authors:  Charles M Gabrys; Wei Qiang; Yan Sun; Li Xie; Scott D Schmick; David P Weliky
Journal:  J Phys Chem A       Date:  2013-02-28       Impact factor: 2.781

4.  Measurement of Accurate Interfluorine Distances in Crystalline Organic Solids: A High-Frequency Magic Angle Spinning NMR Approach.

Authors:  Matthew Fritz; Jodi Kraus; Caitlin M Quinn; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-12-10       Impact factor: 2.991

5.  Rapid measurement of long-range distances in proteins by multidimensional 13C-19F REDOR NMR under fast magic-angle spinning.

Authors:  Alexander A Shcherbakov; Mei Hong
Journal:  J Biomol NMR       Date:  2018-05-21       Impact factor: 2.835

6.  Structural studies of proteins by paramagnetic solid-state NMR spectroscopy.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

7.  Binding Sites of a Positron Emission Tomography Imaging Agent in Alzheimer's β-Amyloid Fibrils Studied Using 19F Solid-State NMR.

Authors:  Pu Duan; Kelly J Chen; Gayani Wijegunawardena; Aurelio J Dregni; Harrison K Wang; Haifan Wu; Mei Hong
Journal:  J Am Chem Soc       Date:  2022-01-11       Impact factor: 15.419

8.  Kinase-active signaling complexes of bacterial chemoreceptors do not contain proposed receptor-receptor contacts observed in crystal structures.

Authors:  Daniel J Fowler; Robert M Weis; Lynmarie K Thompson
Journal:  Biochemistry       Date:  2010-02-23       Impact factor: 3.162

9.  Two-dimensional 19F-13C correlation NMR for 19F resonance assignment of fluorinated proteins.

Authors:  Alexander A Shcherbakov; Matthias Roos; Byungsu Kwon; Mei Hong
Journal:  J Biomol NMR       Date:  2020-02-22       Impact factor: 2.835

Review 10.  From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.

Authors:  Alexander A Shcherbakov; João Medeiros-Silva; Nhi Tran; Martin D Gelenter; Mei Hong
Journal:  Chem Rev       Date:  2021-10-25       Impact factor: 72.087

  10 in total

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