Literature DB >> 29783984

Biobanks and scientists: supply and demand.

Angelo Virgilio Paradiso1, Maria Grazia Daidone2, Vincenzo Canzonieri3, Alfredo Zito4.   

Abstract

The biobanks, providers of biospecimens, and the scientists, users of biological material, are both strategic actors in translational medicine but the communication about those two subjects seems to be delicate. Recently, biobank managers from US and Europe stressed the danger of underuse of biospecimens stored in their biobanks thus stimulating the debate about innovative ways to collect samples and to communicate their availability. We hypothesize that the already stored collections meet the interest of present scientists only in specific situations. Serial biospecimens from patients with large associated clinical data concerning voluptuary habits, environmental exposure, anthropomorphic information are needed to meet the even more specific projects the scientists are planning. The hypothesis of activation of specific sections in ranked journals aimed to facilitate the communication between partners interested in finding/collecting ad hoc biospecimens is discussed.

Entities:  

Keywords:  Biobank; Biospecimen; Translational medicine; Underuse

Mesh:

Year:  2018        PMID: 29783984      PMCID: PMC5963141          DOI: 10.1186/s12967-018-1505-8

Source DB:  PubMed          Journal:  J Transl Med        ISSN: 1479-5876            Impact factor:   5.531


Human research biobanks can be defined as structured collection, specifically developed as resources for research, of high-quality human biological materials associated with clinical/biological data and potentially organized to facilitate biospecimens sharing among scientists [1]. Human biobanks have been variously classified (according to donor characteristics, design of the accrual, type of biospecimens collected, conditions of storage, sponsorship, etc.) [2] but a simple classification referring to type of research intended to be supported (population study, basic research, translational study, clinical trial) has been also suggested [3]. Recently, the recent development of innovative technological tools and the need for personalized approach to each patient, has led to the development of research biobank structures where biospecimens collection, storage conditions, data handling are managed according to high quality standards. A primary emerging need from this situation is the development of a real biobank science in which knowledge of ethical-legal local regulations, and expertise of biobank operators through specific education/training program play a major role. Sometimes, the biobanks have been planned as population-wide collection, as large inter-institutional specimen centralized-collections (i.e. ORIEN biobank, led by Ohio state and several US universities), or, even, as world-wide initiatives (i.e. Wellcome Trust Sanger Institute, Cancer Genome Project). An updated inventory data about the bioresources, describing availability of various resource types such as biological material, data, expertise, and offered services in Europe has been recently published [4]. The relevance that such structures have in a modern research scenario is demonstrated by the constant increase in biobank number. A recent US survey reported that two-thirds of operating biobanks have been established within the last decade [5]. However, the debate about the sustainability of human research biobanks and use of preserved biospecimens is heated. The costs of requested technologies [6], the strategic role of biospecimens in translational research [7] and ethical issues related to the responsibility to preserve and utilize human tissues for public benefit [8], contribute to become the discussion stimulating from several points of view and crucial for the development of personalized medicine. A critical point stressed by several recent reports is the underuse of the biological material preserved in biobanks. Henderson [9] reported that “many biobankers are worried about underutilization of specimens”. Scudellari [10] stressed that this is not a problem unique to US institutions. Several issues have been identified as limiting steps for the effective utilization of biobanked specimens: the low quality [11] but also the unknown, undocumented or uncertifiable quality [12] of the collections have been described as a main problem by several biobankers; the presence of an efficient model of governance supported by an optimal workflow and informatics, chain of custody, centralized Institutional Review Board (IRB), unrestricted policies have been also considered essential to facilitate and encourage the involvement of biobanks in translational research [13]; a lack of proper advertise of available collections at institutional and external conferences is retained to be a further relevant negative factor [9]; we already stressed the problem of limited involvement of patients and civil society in direct governance of biobanks [14]. Puchois [15] debated the relevance of access policies, sometime explicitly excluding investigators who are associated with drug-biomedical tools for profit companies from the access to biospecimens. Lastly, a sort of academic prudishness limiting the distribution of samples from academy to industry has to be mentioned; what a shame, since a majority of new diagnostics and drugs come from industry. More specific comments concern peculiar characteristics of the collections. A continuous analysis of research trends [16] and innovative biotech approaches [17] are necessary in order to meet the evolving biospecimen needs for groundbreaking aspects of the scientific world. This problem refers to two aspects: the availability of associated new and relevant clinical biological data to preserved biospecimens; the adoption of appropriate sampling procedures for biospecimens to be biobanked for new trial designs. The research in cancer is even more frequently conducted in series of biospecimens from cohort of subjects with very specific habits, clinical, pathological, biomolecular, environmental characteristics [18] and only occasionally series of biospecimens with these features are available or at least advertised as available by biobanks. Some biobanks are organized to acquire basal and updated information of participants to specific cohorts of subjects such as disease follow-up, voluptuary habits, work conditions, thus laying the foundations for highly specialized environmental researches also. Furthermore, biomarker and genetic data belonging to biobanked samples may have to return to the Biobank to continuously enrich the research value of the single biospecimen and to permit its utilization in further more detailed studies. These considerations should motivate biobanks to move from the concept of “minimum essential data” [19] to the hypothesis of a wide “maximum” accompanying kit of data associated with each sample. An example of such approach is represented by our collection, at Institute Tumori-Bari, of blood samples from 250 healthy heavy smokers followed for more than 5 years. Information on familiarity, anthropometric characteristics and all voluptuary habits have been associated to each biospecimen. These samples could represent an interesting mine for scientists involved in lung cancerogenesis, exposure to xenobiotics, biological damage and so on. New trials focused their attention on availability of patient’s biospecimens fitting for innovative lab approaches. An eloquent example is represented by sampling multiple synchronous biospecimens (normal tissue, pathological tissue, blood, urines, etc.) from the same patient useful to individualize germinal and/or somatic genetic characteristics of pathogenic relevance for several cancers. The availability in our biobank of a series of 500 women with 5 years of follow-up, provided of a complete set of familial and clinical data, with presurgical blood and surgically removed tissues from normal and tumor breast could represent the basis for new scientific ideas. A last example of such approach moving towards a modern biobanking activity could be represented by the innovative design of N-of-1 trial [20] in which serial sampling of liquid biopsies are requested to monitor the biomolecular progression of the cancer. Are there biobanks organized to routinely collect biospecimens from blood serial samples? Those are only examples of how biobankers and scientists should more deeply and urgently interact to optimize the support to bench research. If we agree about such a view, we should think about new ways to facilitate communications about those main actors: academic scientists, industry scientists and biobankers. Ranked journal should provide a specific section in which accreditated biobanks could have the possibility to describe peculiar collections of biospecimens they possess and, conversely, scientists could find the possibility to describe the characteristics of ad hoc series of samples they are looking for these information could concern collected samples already stored or series of samples to be prospectively collected. An example of such approach at the individual sample level, is http://www.ispecimen.com, a functional platform that could really enhance sample utilization through personalized sample request. Allen [21] suggests that “the goal is to form small, flexible, ad hoc groups of biobanks for each sample request, based on the type of sample and the difficulty of collection”. In this framework, why do not think to a “personalized” request approach by the researchers to an Institutional Biobank? The experience of Bio-banking “on demand”, firstly developed at the CRO Aviano Cancer Center, is moving towards this direction. Scientists can ask for biomaterials not routinely collected (e.g. sebum). biomaterials collected in additional timings (e.g. after n cycles of therapy); samples collected from the general population (e.g. patients with negative colonoscopy to be used as “real” negative control of colon cancer patients). Preliminary results coming from this “on demand” approach seem positive and directly influencing the satisfaction of the researchers and, not for last, the awareness of the participants/patients donating their biospecimens on their valuable contribution. This is what usually happens in the even faster world of work: supply and demand counteract, dynamically and quickly.
  20 in total

Review 1.  Ensuring Sample Quality for Biomarker Discovery Studies - Use of ICT Tools to Trace Biosample Life-cycle.

Authors:  Silvia Riondino; Patrizia Ferroni; Antonella Spila; Jhessica Alessandroni; Roberta D'Alessandro; Vincenzo Formica; David Della-Morte; Raffaele Palmirotta; Umberto Nanni; Mario Roselli; Fiorella Guadagni
Journal:  Cancer Genomics Proteomics       Date:  2015 Nov-Dec       Impact factor: 4.069

2.  Ensuring Biobank Value Through Effective Utilization.

Authors:  Sherilyn J Sawyer; Jeffrey M Otto; K Stephen Suh
Journal:  Biopreserv Biobank       Date:  2015-12       Impact factor: 2.300

3.  Finding ways to improve the use of biobanks.

Authors:  Angelo Paradiso; Mats Hansson
Journal:  Nat Med       Date:  2013-07       Impact factor: 53.440

4.  Finding ways to improve the use of biobanks.

Authors:  Pascal Puchois
Journal:  Nat Med       Date:  2013-07       Impact factor: 53.440

5.  Biobankonomics: developing a sustainable business model approach for the formation of a human tissue biobank.

Authors:  Jimmie Vaught; Joyce Rogers; Todd Carolin; Carolyn Compton
Journal:  J Natl Cancer Inst Monogr       Date:  2011

6.  A Minimum Data Set for Sharing Biobank Samples, Information, and Data: MIABIS.

Authors:  Loreana Norlin; Martin N Fransson; Mikael Eriksson; Roxana Merino-Martinez; Maria Anderberg; Sanela Kurtovic; Jan-Eric Litton
Journal:  Biopreserv Biobank       Date:  2012-08       Impact factor: 2.300

7.  Introduction to cancer biobanking: why, where, how?

Authors:  Angelo Paradiso; Maria Grazia Daidone; Peter Riegman
Journal:  Biopreserv Biobank       Date:  2011-06       Impact factor: 2.300

8.  Cancer diagnosis and prognosis decoded by blood-based circulating microRNA signatures.

Authors:  Dharanija Madhavan; Katarina Cuk; Barbara Burwinkel; Rongxi Yang
Journal:  Front Genet       Date:  2013-06-21       Impact factor: 4.599

9.  Characterizing biobank organizations in the U.S.: results from a national survey.

Authors:  Gail E Henderson; R Jean Cadigan; Teresa P Edwards; Ian Conlon; Anders G Nelson; James P Evans; Arlene M Davis; Catherine Zimmer; Bryan J Weiner
Journal:  Genome Med       Date:  2013-01-25       Impact factor: 11.117

10.  Assays for Qualification and Quality Stratification of Clinical Biospecimens Used in Research: A Technical Report from the ISBER Biospecimen Science Working Group.

Authors:  Fay Betsou; Alexandre Bulla; Sang Yun Cho; Judith Clements; Rodrigo Chuaqui; Domenico Coppola; Yvonne De Souza; Annemieke De Wilde; William Grizzle; Fiorella Guadagni; Elaine Gunter; Stacey Heil; Verity Hodgkinson; Joseph Kessler; Michael Kiehntopf; Hee Sung Kim; Iren Koppandi; Katheryn Shea; Rajeev Singh; Marc Sobel; Stella Somiari; Demetri Spyropoulos; Mars Stone; Gunnel Tybring; Klara Valyi-Nagy; Gert Van den Eynden; Lalita Wadhwa
Journal:  Biopreserv Biobank       Date:  2016-04-05       Impact factor: 2.300

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  6 in total

1.  Enhancing Cooperation Between Academic Biobanks and Biomedical Industry: Better Mutual Understanding and New Collaborative Models Are Needed.

Authors:  Daniel Simeon-Dubach; Michael H Roehrl; Paul Hofman; Pascal Puchois
Journal:  Biopreserv Biobank       Date:  2020-02-11       Impact factor: 2.300

2.  Impact of different stabilization methods on RT-qPCR results using human lung tissue samples.

Authors:  Margalida Esteva-Socias; Fernando Gómez-Romano; José Antonio Carrillo-Ávila; Alicia Loreto Sánchez-Navarro; Cristina Villena
Journal:  Sci Rep       Date:  2020-02-27       Impact factor: 4.379

3.  Biobanks and Individual Health Related Findings: from an Obstacle to an Incentive.

Authors:  Jurate Lekstutiene; Søren Holm; Eugenijus Gefenas
Journal:  Sci Eng Ethics       Date:  2021-08-11       Impact factor: 3.525

4.  Moving with the Times: The Health Science Alliance (HSA) Biobank, Pathway to Sustainability.

Authors:  Carmel M Quinn; Mamta Porwal; Nicola S Meagher; Anusha Hettiaratchi; Carl Power; Jitendra Jonnaggadala; Sue McCullough; Stephanie Macmillan; Katrina Tang; Winston Liauw; David Goldstein; Nikolajs Zeps; Philip J Crowe
Journal:  Biomark Insights       Date:  2021-03-27

Review 5.  Collection and use of human materials during TB clinical research; a review of practices.

Authors:  Joseph Ochieng; Betty Kwagala; Nelson Sewankambo
Journal:  BMC Med Ethics       Date:  2022-03-29       Impact factor: 2.834

Review 6.  Basic principles of biobanking: from biological samples to precision medicine for patients.

Authors:  Laura Annaratone; Giuseppe De Palma; Giuseppina Bonizzi; Anna Sapino; Gerardo Botti; Enrico Berrino; Chiara Mannelli; Pamela Arcella; Simona Di Martino; Agostino Steffan; Maria Grazia Daidone; Vincenzo Canzonieri; Barbara Parodi; Angelo Virgilio Paradiso; Massimo Barberis; Caterina Marchiò
Journal:  Virchows Arch       Date:  2021-07-13       Impact factor: 4.064

  6 in total

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