Literature DB >> 29779790

A Hyperthermophilic Phage Decoration Protein Suggests Common Evolutionary Origin with Herpesvirus Triplex Proteins and an Anti-CRISPR Protein.

Nicholas P Stone1, Brendan J Hilbert1, Daniel Hidalgo1, Kevin T Halloran1, Jooyoung Lee2, Erik J Sontheimer2, Brian A Kelch3.   

Abstract

Virus capsids are protein shells that protect the viral genome from environmental assaults, while maintaining the high internal pressure of the tightly packaged genome. To elucidate how capsids maintain stability under harsh conditions, we investigated the capsid components of the hyperthermophilic phage P74-26. We determined the structure of capsid protein gp87 and show that it has the same fold as decoration proteins in many other phages, despite lacking significant sequence homology. We also find that gp87 is significantly more stable than mesophilic homologs. Our analysis of the gp87 structure reveals that the core "β tulip" domain is conserved in trimeric capsid components across numerous double-stranded DNA viruses, including Herpesviruses. Moreover, this β barrel domain is found in anti-CRISPR protein AcrIIC1, suggesting a mechanism for the evolution of this Cas9 inhibitor. Our work illustrates the principles for increased stability of gp87, and extends the evolutionary reach of the β tulip domain.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  anti-CRISPR protein; capsid decoration protein; double-stranded DNA virus; viral proteins

Mesh:

Substances:

Year:  2018        PMID: 29779790      PMCID: PMC6277972          DOI: 10.1016/j.str.2018.04.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  85 in total

1.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
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2.  InterProSurf: a web server for predicting interacting sites on protein surfaces.

Authors:  Surendra S Negi; Catherine H Schein; Numan Oezguen; Trevor D Power; Werner Braun
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Review 3.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

4.  Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids.

Authors:  Joost Snijder; Kerstin Radtke; Fenja Anderson; Luella Scholtes; Eleonora Corradini; Joel Baines; Albert J R Heck; Gijs J L Wuite; Beate Sodeik; Wouter H Roos
Journal:  J Virol       Date:  2017-05-26       Impact factor: 5.103

5.  Structure of a Reptilian Adenovirus Reveals a Phage Tailspike Fold Stabilizing a Vertebrate Virus Capsid.

Authors:  Rosa Menéndez-Conejero; Thanh H Nguyen; Abhimanyu K Singh; Gabriela N Condezo; Rachel E Marschang; Mark J van Raaij; Carmen San Martín
Journal:  Structure       Date:  2017-09-21       Impact factor: 5.006

6.  Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells.

Authors:  P E Prevelige; D Thomas; J King
Journal:  Biophys J       Date:  1993-03       Impact factor: 4.033

7.  Novel approach to phasing proteins: derivatization by short cryo-soaking with halides.

Authors:  Z Dauter; M Dauter; K R Rajashankar
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Review 8.  The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs.

Authors:  Adair L Borges; Alan R Davidson; Joseph Bondy-Denomy
Journal:  Annu Rev Virol       Date:  2017-07-27       Impact factor: 10.431

9.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

10.  MMDB and VAST+: tracking structural similarities between macromolecular complexes.

Authors:  Thomas Madej; Christopher J Lanczycki; Dachuan Zhang; Paul A Thiessen; Renata C Geer; Aron Marchler-Bauer; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

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  11 in total

Review 1.  Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression.

Authors:  Tanner Wiegand; Shweta Karambelkar; Joseph Bondy-Denomy; Blake Wiedenheft
Journal:  Annu Rev Microbiol       Date:  2020-06-05       Impact factor: 15.500

2.  A thermophilic phage uses a small terminase protein with a fixed helix-turn-helix geometry.

Authors:  Janelle A Hayes; Brendan J Hilbert; Christl Gaubitz; Nicholas P Stone; Brian A Kelch
Journal:  J Biol Chem       Date:  2020-02-03       Impact factor: 5.157

3.  Phage G Structure at 6.1 Å Resolution, Condensed DNA, and Host Identity Revision to a Lysinibacillus.

Authors:  Brenda González; Lyman Monroe; Kunpeng Li; Rui Yan; Elena Wright; Thomas Walter; Daisuke Kihara; Susan T Weintraub; Julie A Thomas; Philip Serwer; Wen Jiang
Journal:  J Mol Biol       Date:  2020-05-23       Impact factor: 5.469

4.  Potent Cas9 Inhibition in Bacterial and Human Cells by AcrIIC4 and AcrIIC5 Anti-CRISPR Proteins.

Authors:  Jooyoung Lee; Aamir Mir; Alireza Edraki; Bianca Garcia; Nadia Amrani; Hannah E Lou; Ildar Gainetdinov; April Pawluk; Raed Ibraheim; Xin D Gao; Pengpeng Liu; Alan R Davidson; Karen L Maxwell; Erik J Sontheimer
Journal:  mBio       Date:  2018-12-04       Impact factor: 7.867

5.  Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.

Authors:  Oliver W Bayfield; Evgeny Klimuk; Dennis C Winkler; Emma L Hesketh; Maria Chechik; Naiqian Cheng; Eric C Dykeman; Leonid Minakhin; Neil A Ranson; Konstantin Severinov; Alasdair C Steven; Alfred A Antson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-08       Impact factor: 11.205

6.  The phage L capsid decoration protein has a novel OB-fold and an unusual capsid binding strategy.

Authors:  Rebecca L Newcomer; Jason R Schrad; Eddie B Gilcrease; Sherwood R Casjens; Michael Feig; Carolyn M Teschke; Andrei T Alexandrescu; Kristin N Parent
Journal:  Elife       Date:  2019-04-04       Impact factor: 8.140

7.  Principles for enhancing virus capsid capacity and stability from a thermophilic virus capsid structure.

Authors:  Nicholas P Stone; Gabriel Demo; Emily Agnello; Brian A Kelch
Journal:  Nat Commun       Date:  2019-10-02       Impact factor: 14.919

Review 8.  Keeping crispr in check: diverse mechanisms of phage-encoded anti-crisprs.

Authors:  Despoina Trasanidou; Ana Sousa Gerós; Prarthana Mohanraju; Anna Cornelia Nieuwenweg; Franklin L Nobrega; Raymond H J Staals
Journal:  FEMS Microbiol Lett       Date:  2019-05-01       Impact factor: 2.742

9.  A cornucopia of Shigella phages from the Cornhusker State.

Authors:  Sarah M Doore; Jason R Schrad; Hailee R Perrett; Kevin P Schrad; William F Dean; Kristin N Parent
Journal:  Virology       Date:  2019-09-18       Impact factor: 3.616

10.  Functional metagenomics-guided discovery of potent Cas9 inhibitors in the human microbiome.

Authors:  Kevin J Forsberg; Ishan V Bhatt; Danica T Schmidtke; Kamyab Javanmardi; Kaylee E Dillard; Barry L Stoddard; Ilya J Finkelstein; Brett K Kaiser; Harmit S Malik
Journal:  Elife       Date:  2019-09-10       Impact factor: 8.140

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