Literature DB >> 31569014

A cornucopia of Shigella phages from the Cornhusker State.

Sarah M Doore1, Jason R Schrad2, Hailee R Perrett2, Kevin P Schrad3, William F Dean2, Kristin N Parent4.   

Abstract

Bacteriophages are abundant in the environment, yet the vast majority have not been discovered or described. Many characterized bacteriophages infect a small subset of Enterobacteriaceae hosts. Despite its similarity to Escherichia coli, the pathogenic Shigella flexneri has relatively few known phages, which exhibit significant differences from many E. coli phages. This suggests that isolating additional Shigella phages is necessary to further explore these differences. To address questions of novelty and prevalence, high school students isolated bacteriophages on non-pathogenic strains of enteric bacteria. Results indicate that Shigella phages are abundant in the environment and continue to differ significantly from E. coli phages. Our findings suggest that Shigella-infecting members of the Ounavirinae subfamily continue to be over-represented and show surprisingly low diversity within and between sampling sites. Additionally, a podophage with distinct genomic and structural properties suggests that continued isolation on non-model species of bacteria is necessary to truly understand bacteriophage diversity.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Autographivirinae; Bacteriophage diversity; Bacteriophage hunting; Genomics; High school research; Mooglevirus; Ounavirinae; Phylogenetics; Shigella bacteriophage; Virus ecology

Mesh:

Substances:

Year:  2019        PMID: 31569014      PMCID: PMC7009021          DOI: 10.1016/j.virol.2019.09.007

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  31 in total

1.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

2.  Isolation of Shigella dysenteriae type 1 and S. flexneri strains from surface waters in Bangladesh: comparative molecular analysis of environmental Shigella isolates versus clinical strains.

Authors:  Shah M Faruque; Rasel Khan; M Kamruzzaman; Shinji Yamasaki; Q Shafi Ahmad; Tasnim Azim; G Balakrish Nair; Yoshifumi Takeda; David A Sack
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

3.  Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage.

Authors:  R W Hendrix; M C Smith; R N Burns; M E Ford; G F Hatfull
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

4.  Lipopolysaccharide core structures and their correlation with genetic groupings of Shigella strains. A novel core variant in Shigella boydii type 16.

Authors:  Yuriy A Knirel; Anna N Kondakova; Evgeny Vinogradov; Buko Lindner; Andrei V Perepelov; Alexander S Shashkov
Journal:  Glycobiology       Date:  2011-07-13       Impact factor: 4.313

Review 5.  Bacteriophages and their genomes.

Authors:  Graham F Hatfull; Roger W Hendrix
Journal:  Curr Opin Virol       Date:  2011-10       Impact factor: 7.090

6.  Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.

Authors:  Julianne H Grose; Sherwood R Casjens
Journal:  Virology       Date:  2014-11       Impact factor: 3.616

7.  Characterization and Genomic Analysis of SFPH2, a Novel T7virus Infecting Shigella.

Authors:  Chaojie Yang; Haiying Wang; Hui Ma; Renlong Bao; Hongbo Liu; Lang Yang; Beibei Liang; Leili Jia; Jing Xie; Ying Xiang; Nian Dong; Shaofu Qiu; Hongbin Song
Journal:  Front Microbiol       Date:  2018-12-14       Impact factor: 5.640

8.  Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.

Authors:  Oliver W Bayfield; Evgeny Klimuk; Dennis C Winkler; Emma L Hesketh; Maria Chechik; Naiqian Cheng; Eric C Dykeman; Leonid Minakhin; Neil A Ranson; Konstantin Severinov; Alasdair C Steven; Alfred A Antson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-08       Impact factor: 11.205

9.  High-throughput functional annotation and data mining with the Blast2GO suite.

Authors:  Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Tim D Williams; Shivashankar H Nagaraj; María José Nueda; Montserrat Robles; Manuel Talón; Joaquín Dopazo; Ana Conesa
Journal:  Nucleic Acids Res       Date:  2008-04-29       Impact factor: 16.971

10.  Evolved Populations of Shigella flexneri Phage Sf6 Acquire Large Deletions, Altered Genomic Architecture, and Faster Life Cycles.

Authors:  John A Dover; Alita R Burmeister; Ian J Molineux; Kristin N Parent
Journal:  Genome Biol Evol       Date:  2016-09-19       Impact factor: 3.416

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  2 in total

Review 1.  Ecology, Structure, and Evolution of Shigella Phages.

Authors:  Sundharraman Subramanian; Kristin N Parent; Sarah M Doore
Journal:  Annu Rev Virol       Date:  2020-05-11       Impact factor: 10.431

2.  Large metabolic rewiring from small genomic changes between strains of Shigella flexneri.

Authors:  Sarah M Doore; Sundharraman Subramanian; Nicholas M Tefft; Renato Morona; Michaela A TerAvest; Kristin N Parent
Journal:  J Bacteriol       Date:  2021-03-22       Impact factor: 3.490

  2 in total

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