Literature DB >> 29774597

Assessment of the generalization of learned image reconstruction and the potential for transfer learning.

Florian Knoll1,2, Kerstin Hammernik1,2,3, Erich Kobler3, Thomas Pock3,4, Michael P Recht1,2, Daniel K Sodickson1,2.   

Abstract

PURPOSE: Although deep learning has shown great promise for MR image reconstruction, an open question regarding the success of this approach is the robustness in the case of deviations between training and test data. The goal of this study is to assess the influence of image contrast, SNR, and image content on the generalization of learned image reconstruction, and to demonstrate the potential for transfer learning.
METHODS: Reconstructions were trained from undersampled data using data sets with varying SNR, sampling pattern, image contrast, and synthetic data generated from a public image database. The performance of the trained reconstructions was evaluated on 10 in vivo patient knee MRI acquisitions from 2 different pulse sequences that were not used during training. Transfer learning was evaluated by fine-tuning baseline trainings from synthetic data with a small subset of in vivo MR training data.
RESULTS: Deviations in SNR between training and testing led to substantial decreases in reconstruction image quality, whereas image contrast was less relevant. Trainings from heterogeneous training data generalized well toward the test data with a range of acquisition parameters. Trainings from synthetic, non-MR image data showed residual aliasing artifacts, which could be removed by transfer learning-inspired fine-tuning.
CONCLUSION: This study presents insights into the generalization ability of learned image reconstruction with respect to deviations in the acquisition settings between training and testing. It also provides an outlook for the potential of transfer learning to fine-tune trainings to a particular target application using only a small number of training cases.
© 2018 International Society for Magnetic Resonance in Medicine.

Entities:  

Keywords:  accelerated imaging; deep learning; iterative image reconstruction; machine learning; transfer learning; variational network

Mesh:

Substances:

Year:  2018        PMID: 29774597      PMCID: PMC6240410          DOI: 10.1002/mrm.27355

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  7 in total

1.  Advances in sensitivity encoding with arbitrary k-space trajectories.

Authors:  K P Pruessmann; M Weiger; P Börnert; P Boesiger
Journal:  Magn Reson Med       Date:  2001-10       Impact factor: 4.668

2.  Image quality assessment: from error visibility to structural similarity.

Authors:  Zhou Wang; Alan Conrad Bovik; Hamid Rahim Sheikh; Eero P Simoncelli
Journal:  IEEE Trans Image Process       Date:  2004-04       Impact factor: 10.856

3.  Sparse MRI: The application of compressed sensing for rapid MR imaging.

Authors:  Michael Lustig; David Donoho; John M Pauly
Journal:  Magn Reson Med       Date:  2007-12       Impact factor: 4.668

Review 4.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

5.  A parallel MR imaging method using multilayer perceptron.

Authors:  Kinam Kwon; Dongchan Kim; HyunWook Park
Journal:  Med Phys       Date:  2017-10-23       Impact factor: 4.071

6.  Learning a variational network for reconstruction of accelerated MRI data.

Authors:  Kerstin Hammernik; Teresa Klatzer; Erich Kobler; Michael P Recht; Daniel K Sodickson; Thomas Pock; Florian Knoll
Journal:  Magn Reson Med       Date:  2017-11-08       Impact factor: 4.668

7.  ESPIRiT--an eigenvalue approach to autocalibrating parallel MRI: where SENSE meets GRAPPA.

Authors:  Martin Uecker; Peng Lai; Mark J Murphy; Patrick Virtue; Michael Elad; John M Pauly; Shreyas S Vasanawala; Michael Lustig
Journal:  Magn Reson Med       Date:  2014-03       Impact factor: 4.668

  7 in total
  37 in total

1.  Self-supervised learning of physics-guided reconstruction neural networks without fully sampled reference data.

Authors:  Burhaneddin Yaman; Seyed Amir Hossein Hosseini; Steen Moeller; Jutta Ellermann; Kâmil Uğurbil; Mehmet Akçakaya
Journal:  Magn Reson Med       Date:  2020-07-02       Impact factor: 4.668

2.  Training a neural network for Gibbs and noise removal in diffusion MRI.

Authors:  Matthew J Muckley; Benjamin Ades-Aron; Antonios Papaioannou; Gregory Lemberskiy; Eddy Solomon; Yvonne W Lui; Daniel K Sodickson; Els Fieremans; Dmitry S Novikov; Florian Knoll
Journal:  Magn Reson Med       Date:  2020-07-14       Impact factor: 4.668

3.  Reconstruction of undersampled 3D non-Cartesian image-based navigators for coronary MRA using an unrolled deep learning model.

Authors:  Mario O Malavé; Corey A Baron; Srivathsan P Koundinyan; Christopher M Sandino; Frank Ong; Joseph Y Cheng; Dwight G Nishimura
Journal:  Magn Reson Med       Date:  2020-02-03       Impact factor: 4.668

4.  fastMRI: A Publicly Available Raw k-Space and DICOM Dataset of Knee Images for Accelerated MR Image Reconstruction Using Machine Learning.

Authors:  Florian Knoll; Jure Zbontar; Anuroop Sriram; Matthew J Muckley; Mary Bruno; Aaron Defazio; Marc Parente; Krzysztof J Geras; Joe Katsnelson; Hersh Chandarana; Zizhao Zhang; Michal Drozdzalv; Adriana Romero; Michael Rabbat; Pascal Vincent; James Pinkerton; Duo Wang; Nafissa Yakubova; Erich Owens; C Lawrence Zitnick; Michael P Recht; Daniel K Sodickson; Yvonne W Lui
Journal:  Radiol Artif Intell       Date:  2020-01-29

5.  Advancing machine learning for MR image reconstruction with an open competition: Overview of the 2019 fastMRI challenge.

Authors:  Florian Knoll; Tullie Murrell; Anuroop Sriram; Nafissa Yakubova; Jure Zbontar; Michael Rabbat; Aaron Defazio; Matthew J Muckley; Daniel K Sodickson; C Lawrence Zitnick; Michael P Recht
Journal:  Magn Reson Med       Date:  2020-06-07       Impact factor: 4.668

6.  Ultimate MRI.

Authors:  Lawrence L Wald
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

7.  Dense Recurrent Neural Networks for Accelerated MRI: History-Cognizant Unrolling of Optimization Algorithms.

Authors:  Seyed Amir Hossein Hosseini; Burhaneddin Yaman; Steen Moeller; Mingyi Hong; Mehmet Akçakaya
Journal:  IEEE J Sel Top Signal Process       Date:  2020-06-17       Impact factor: 6.856

8.  Deep Magnetic Resonance Image Reconstruction: Inverse Problems Meet Neural Networks.

Authors:  Dong Liang; Jing Cheng; Ziwen Ke; Leslie Ying
Journal:  IEEE Signal Process Mag       Date:  2020-01-20       Impact factor: 12.551

Review 9.  Artificial Intelligence in Musculoskeletal Imaging: Current Status and Future Directions.

Authors:  Soterios Gyftopoulos; Dana Lin; Florian Knoll; Ankur M Doshi; Tatiane Cantarelli Rodrigues; Michael P Recht
Journal:  AJR Am J Roentgenol       Date:  2019-06-05       Impact factor: 3.959

10.  Compressed Sensing: From Research to Clinical Practice with Deep Neural Networks.

Authors:  Christopher M Sandino; Joseph Y Cheng; Feiyu Chen; Morteza Mardani; John M Pauly; Shreyas S Vasanawala
Journal:  IEEE Signal Process Mag       Date:  2020-01-17       Impact factor: 12.551

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.