Literature DB >> 32506658

Advancing machine learning for MR image reconstruction with an open competition: Overview of the 2019 fastMRI challenge.

Florian Knoll1, Tullie Murrell2, Anuroop Sriram2, Nafissa Yakubova2, Jure Zbontar2, Michael Rabbat2, Aaron Defazio2, Matthew J Muckley1, Daniel K Sodickson1, C Lawrence Zitnick2, Michael P Recht1.   

Abstract

PURPOSE: To advance research in the field of machine learning for MR image reconstruction with an open challenge.
METHODS: We provided participants with a dataset of raw k-space data from 1,594 consecutive clinical exams of the knee. The goal of the challenge was to reconstruct images from these data. In order to strike a balance between realistic data and a shallow learning curve for those not already familiar with MR image reconstruction, we ran multiple tracks for multi-coil and single-coil data. We performed a two-stage evaluation based on quantitative image metrics followed by evaluation by a panel of radiologists. The challenge ran from June to December of 2019.
RESULTS: We received a total of 33 challenge submissions. All participants chose to submit results from supervised machine learning approaches.
CONCLUSIONS: The challenge led to new developments in machine learning for image reconstruction, provided insight into the current state of the art in the field, and highlighted remaining hurdles for clinical adoption.
© 2020 International Society for Magnetic Resonance in Medicine.

Entities:  

Keywords:  challenge; compressed sensing; fast imaging; image reconstruction; machine learning, optimization; parallel imaging; public dataset

Mesh:

Year:  2020        PMID: 32506658      PMCID: PMC7719611          DOI: 10.1002/mrm.28338

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  29 in total

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Authors:  Zhou Wang; Alan Conrad Bovik; Hamid Rahim Sheikh; Eero P Simoncelli
Journal:  IEEE Trans Image Process       Date:  2004-04       Impact factor: 10.856

2.  Parallel magnetic resonance imaging using the GRAPPA operator formalism.

Authors:  Mark A Griswold; Martin Blaimer; Felix Breuer; Robin M Heidemann; Matthias Mueller; Peter M Jakob
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

3.  Simultaneous acquisition of spatial harmonics (SMASH): fast imaging with radiofrequency coil arrays.

Authors:  D K Sodickson; W J Manning
Journal:  Magn Reson Med       Date:  1997-10       Impact factor: 4.668

4.  Deep Convolutional Neural Network for Inverse Problems in Imaging.

Authors:  Michael T McCann; Emmanuel Froustey; Michael Unser
Journal:  IEEE Trans Image Process       Date:  2017-06-15       Impact factor: 10.856

5.  Learned Primal-Dual Reconstruction.

Authors:  Jonas Adler; Ozan Oktem
Journal:  IEEE Trans Med Imaging       Date:  2018-06       Impact factor: 10.048

6.  Low-Dose CT With a Residual Encoder-Decoder Convolutional Neural Network.

Authors:  Hu Chen; Yi Zhang; Mannudeep K Kalra; Feng Lin; Yang Chen; Peixi Liao; Jiliu Zhou; Ge Wang
Journal:  IEEE Trans Med Imaging       Date:  2017-06-13       Impact factor: 10.048

7.  Generative Adversarial Networks for Noise Reduction in Low-Dose CT.

Authors:  Jelmer M Wolterink; Tim Leiner; Max A Viergever; Ivana Isgum
Journal:  IEEE Trans Med Imaging       Date:  2017-05-26       Impact factor: 10.048

8.  Learning a variational network for reconstruction of accelerated MRI data.

Authors:  Kerstin Hammernik; Teresa Klatzer; Erich Kobler; Michael P Recht; Daniel K Sodickson; Thomas Pock; Florian Knoll
Journal:  Magn Reson Med       Date:  2017-11-08       Impact factor: 4.668

9.  Assessment of the generalization of learned image reconstruction and the potential for transfer learning.

Authors:  Florian Knoll; Kerstin Hammernik; Erich Kobler; Thomas Pock; Michael P Recht; Daniel K Sodickson
Journal:  Magn Reson Med       Date:  2018-05-17       Impact factor: 4.668

10.  ESPIRiT--an eigenvalue approach to autocalibrating parallel MRI: where SENSE meets GRAPPA.

Authors:  Martin Uecker; Peng Lai; Mark J Murphy; Patrick Virtue; Michael Elad; John M Pauly; Shreyas S Vasanawala; Michael Lustig
Journal:  Magn Reson Med       Date:  2014-03       Impact factor: 4.668

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  16 in total

Review 1.  Automated Protocoling for MRI Exams-Challenges and Solutions.

Authors:  Jonas Denck; Oliver Haas; Jens Guehring; Andreas Maier; Eva Rothgang
Journal:  J Digit Imaging       Date:  2022-08-30       Impact factor: 4.903

2.  The difficulty of computing stable and accurate neural networks: On the barriers of deep learning and Smale's 18th problem.

Authors:  Matthew J Colbrook; Vegard Antun; Anders C Hansen
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-16       Impact factor: 12.779

3.  Validation of Deep Learning-based Augmentation for Reduced 18F-FDG Dose for PET/MRI in Children and Young Adults with Lymphoma.

Authors:  Ashok J Theruvath; Florian Siedek; Ketan Yerneni; Anne M Muehe; Sheri L Spunt; Allison Pribnow; Michael Moseley; Ying Lu; Qian Zhao; Praveen Gulaka; Akshay Chaudhari; Heike E Daldrup-Link
Journal:  Radiol Artif Intell       Date:  2021-10-06

4.  Improving high frequency image features of deep learning reconstructions via k-space refinement with null-space kernel.

Authors:  Kanghyun Ryu; Cagan Alkan; Shreyas S Vasanawala
Journal:  Magn Reson Med       Date:  2022-04-15       Impact factor: 3.737

5.  Diagnostic interchangeability of deep convolutional neural networks reconstructed knee MR images: preliminary experience.

Authors:  Naveen Subhas; Hongyu Li; Mingrui Yang; Carl S Winalski; Joshua Polster; Nancy Obuchowski; Kenji Mamoto; Ruiying Liu; Chaoyi Zhang; Peizhou Huang; Sunil Kumar Gaire; Dong Liang; Bowen Shen; Xiaojuan Li; Leslie Ying
Journal:  Quant Imaging Med Surg       Date:  2020-09

Review 6.  New acquisition techniques and their prospects for the achievable resolution of fMRI.

Authors:  Saskia Bollmann; Markus Barth
Journal:  Prog Neurobiol       Date:  2020-10-23       Impact factor: 11.685

7.  Bayesian Uncertainty Estimation of Learned Variational MRI Reconstruction.

Authors:  Dominik Narnhofer; Alexander Effland; Erich Kobler; Kerstin Hammernik; Florian Knoll; Thomas Pock
Journal:  IEEE Trans Med Imaging       Date:  2022-02-02       Impact factor: 10.048

8.  Local perturbation responses and checkerboard tests: Characterization tools for nonlinear MRI methods.

Authors:  Chin-Cheng Chan; Justin P Haldar
Journal:  Magn Reson Med       Date:  2021-06-03       Impact factor: 3.737

Review 9.  Prospective Deployment of Deep Learning in MRI: A Framework for Important Considerations, Challenges, and Recommendations for Best Practices.

Authors:  Akshay S Chaudhari; Christopher M Sandino; Elizabeth K Cole; David B Larson; Garry E Gold; Shreyas S Vasanawala; Matthew P Lungren; Brian A Hargreaves; Curtis P Langlotz
Journal:  J Magn Reson Imaging       Date:  2020-08-24       Impact factor: 5.119

10.  A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images.

Authors:  Yongwan Lim; Asterios Toutios; Yannick Bliesener; Ye Tian; Sajan Goud Lingala; Colin Vaz; Tanner Sorensen; Miran Oh; Sarah Harper; Weiyi Chen; Yoonjeong Lee; Johannes Töger; Mairym Lloréns Monteserin; Caitlin Smith; Bianca Godinez; Louis Goldstein; Dani Byrd; Krishna S Nayak; Shrikanth S Narayanan
Journal:  Sci Data       Date:  2021-07-20       Impact factor: 6.444

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