Literature DB >> 29736000

High-speed volumetric imaging of neuronal activity in freely moving rodents.

Oliver Skocek1, Tobias Nöbauer1, Lukas Weilguny2, Francisca Martínez Traub1, Chuying Naomi Xia1, Maxim I Molodtsov2, Abhinav Grama3,4, Masahito Yamagata3,4, Daniel Aharoni5, David D Cox3,4, Peyman Golshani5,6,7, Alipasha Vaziri8,9,10.   

Abstract

Thus far, optical recording of neuronal activity in freely behaving animals has been limited to a thin axial range. We present a head-mounted miniaturized light-field microscope (MiniLFM) capable of capturing neuronal network activity within a volume of 700 × 600 × 360 µm3 at 16 Hz in the hippocampus of freely moving mice. We demonstrate that neurons separated by as little as ~15 µm and at depths up to 360 µm can be discriminated.

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Mesh:

Year:  2018        PMID: 29736000      PMCID: PMC7990085          DOI: 10.1038/s41592-018-0008-0

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  21 in total

1.  Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity.

Authors:  Gaddum Duemani Reddy; Keith Kelleher; Rudy Fink; Peter Saggau
Journal:  Nat Neurosci       Date:  2008-04-27       Impact factor: 24.884

2.  Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.

Authors:  Weijian Zong; Runlong Wu; Mingli Li; Yanhui Hu; Yijun Li; Jinghang Li; Hao Rong; Haitao Wu; Yangyang Xu; Yang Lu; Hongbo Jia; Ming Fan; Zhuan Zhou; Yunfeng Zhang; Aimin Wang; Liangyi Chen; Heping Cheng
Journal:  Nat Methods       Date:  2017-05-29       Impact factor: 28.547

3.  Whole-brain functional imaging at cellular resolution using light-sheet microscopy.

Authors:  Misha B Ahrens; Michael B Orger; Drew N Robson; Jennifer M Li; Philipp J Keller
Journal:  Nat Methods       Date:  2013-03-18       Impact factor: 28.547

Review 4.  In vivo imaging of neural activity.

Authors:  Weijian Yang; Rafael Yuste
Journal:  Nat Methods       Date:  2017-03-31       Impact factor: 28.547

5.  Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.

Authors:  Eftychios A Pnevmatikakis; Daniel Soudry; Yuanjun Gao; Timothy A Machado; Josh Merel; David Pfau; Thomas Reardon; Yu Mu; Clay Lacefield; Weijian Yang; Misha Ahrens; Randy Bruno; Thomas M Jessell; Darcy S Peterka; Rafael Yuste; Liam Paninski
Journal:  Neuron       Date:  2016-01-07       Impact factor: 17.173

6.  Video-rate volumetric functional imaging of the brain at synaptic resolution.

Authors:  Rongwen Lu; Wenzhi Sun; Yajie Liang; Aaron Kerlin; Jens Bierfeld; Johannes D Seelig; Daniel E Wilson; Benjamin Scholl; Boaz Mohar; Masashi Tanimoto; Minoru Koyama; David Fitzpatrick; Michael B Orger; Na Ji
Journal:  Nat Neurosci       Date:  2017-02-27       Impact factor: 24.884

7.  High-speed, miniaturized fluorescence microscopy in freely moving mice.

Authors:  Benjamin A Flusberg; Axel Nimmerjahn; Eric D Cocker; Eran A Mukamel; Robert P J Barretto; Tony H Ko; Laurie D Burns; Juergen C Jung; Mark J Schnitzer
Journal:  Nat Methods       Date:  2008-10-05       Impact factor: 28.547

8.  Long-term dynamics of CA1 hippocampal place codes.

Authors:  Yaniv Ziv; Laurie D Burns; Eric D Cocker; Elizabeth O Hamel; Kunal K Ghosh; Lacey J Kitch; Abbas El Gamal; Mark J Schnitzer
Journal:  Nat Neurosci       Date:  2013-02-10       Impact factor: 24.884

9.  Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.

Authors:  Robert Prevedel; Young-Gyu Yoon; Maximilian Hoffmann; Nikita Pak; Gordon Wetzstein; Saul Kato; Tina Schrödel; Ramesh Raskar; Manuel Zimmer; Edward S Boyden; Alipasha Vaziri
Journal:  Nat Methods       Date:  2014-05-18       Impact factor: 28.547

10.  A shared neural ensemble links distinct contextual memories encoded close in time.

Authors:  Denise J Cai; Daniel Aharoni; Tristan Shuman; Justin Shobe; Jeremy Biane; Weilin Song; Brandon Wei; Michael Veshkini; Mimi La-Vu; Jerry Lou; Sergio E Flores; Isaac Kim; Yoshitake Sano; Miou Zhou; Karsten Baumgaertel; Ayal Lavi; Masakazu Kamata; Mark Tuszynski; Mark Mayford; Peyman Golshani; Alcino J Silva
Journal:  Nature       Date:  2016-05-23       Impact factor: 49.962

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  42 in total

1.  Optimizing the use of biologgers for movement ecology research.

Authors:  Hannah J Williams; Lucy A Taylor; Simon Benhamou; Allert I Bijleveld; Thomas A Clay; Sophie de Grissac; Urška Demšar; Holly M English; Novella Franconi; Agustina Gómez-Laich; Rachael C Griffiths; William P Kay; Juan Manuel Morales; Jonathan R Potts; Katharine F Rogerson; Christian Rutz; Anouk Spelt; Alice M Trevail; Rory P Wilson; Luca Börger
Journal:  J Anim Ecol       Date:  2019-10-01       Impact factor: 5.091

Review 2.  Imaging spinal cord activity in behaving animals.

Authors:  Nicholas A Nelson; Xiang Wang; Daniela Cook; Erin M Carey; Axel Nimmerjahn
Journal:  Exp Neurol       Date:  2019-06-06       Impact factor: 5.330

3.  Wide-Area All-Optical Neurophysiology in Acute Brain Slices.

Authors:  Samouil L Farhi; Vicente J Parot; Abhinav Grama; Masahito Yamagata; Ahmed S Abdelfattah; Yoav Adam; Shan Lou; Jeong Jun Kim; Robert E Campbell; David D Cox; Adam E Cohen
Journal:  J Neurosci       Date:  2019-04-05       Impact factor: 6.167

4.  Miniaturized modular-array fluorescence microscopy.

Authors:  Jeonghwan Son; Biagio Mandracchia; Shu Jia
Journal:  Biomed Opt Express       Date:  2020-11-18       Impact factor: 3.732

5.  Genetically Encoded Voltage Indicators.

Authors:  Irene Mollinedo-Gajate; Chenchen Song; Thomas Knöpfel
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

6.  Two-Photon Fluorescence Imaging.

Authors:  Fan Feng; Heng Mao; Aimin Wang; Liangyi Chen
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

7.  Design of a high-resolution light field miniscope for volumetric imaging in scattering tissue.

Authors:  Yanqin Chen; Bo Xiong; Yujia Xue; Xin Jin; Joseph Greene; Lei Tian
Journal:  Biomed Opt Express       Date:  2020-02-28       Impact factor: 3.732

Review 8.  Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity-at Depth and in Real Time.

Authors:  Laurent C Moreaux; Dimitri Yatsenko; Wesley D Sacher; Jaebin Choi; Changhyuk Lee; Nicole J Kubat; R James Cotton; Edward S Boyden; Michael Z Lin; Lin Tian; Andreas S Tolias; Joyce K S Poon; Kenneth L Shepard; Michael L Roukes
Journal:  Neuron       Date:  2020-10-14       Impact factor: 17.173

9.  Imaging Cortical Dynamics in GCaMP Transgenic Rats with a Head-Mounted Widefield Macroscope.

Authors:  Benjamin B Scott; Stephan Y Thiberge; Caiying Guo; D Gowanlock R Tervo; Carlos D Brody; Alla Y Karpova; David W Tank
Journal:  Neuron       Date:  2018-10-25       Impact factor: 17.173

10.  Fully Integrated Time-Gated 3D Fluorescence Imager for Deep Neural Imaging.

Authors:  Jaebin Choi; Adriaan J Taal; William L Meng; Eric H Pollmann; John W Stanton; Changhyuk Lee; Sajjad Moazeni; Laurent C Moreaux; Michael L Roukes; Kenneth L Shepard
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2020-07-10       Impact factor: 3.833

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