Literature DB >> 34106049

Allosteric conformational ensembles have unlimited capacity for integrating information.

John W Biddle1, Rosa Martinez-Corral1, Felix Wong2,3, Jeremy Gunawardena1.   

Abstract

Integration of binding information by macromolecular entities is fundamental to cellular functionality. Recent work has shown that such integration cannot be explained by pairwise cooperativities, in which binding is modulated by binding at another site. Higher-order cooperativities (HOCs), in which binding is collectively modulated by multiple other binding events, appear to be necessary but an appropriate mechanism has been lacking. We show here that HOCs arise through allostery, in which effective cooperativity emerges indirectly from an ensemble of dynamically interchanging conformations. Conformational ensembles play important roles in many cellular processes but their integrative capabilities remain poorly understood. We show that sufficiently complex ensembles can implement any form of information integration achievable without energy expenditure, including all patterns of HOCs. Our results provide a rigorous biophysical foundation for analysing the integration of binding information through allostery. We discuss the implications for eukaryotic gene regulation, where complex conformational dynamics accompanies widespread information integration.
© 2021, Biddle et al.

Entities:  

Keywords:  allostery; conformational ensembles; higher-order coopeartivity; information integration; linear framework; molecular biophysics; none; physics of living systems; structural biology

Year:  2021        PMID: 34106049      PMCID: PMC8189718          DOI: 10.7554/eLife.65498

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  96 in total

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Authors:  Alexandr P Kornev; Susan S Taylor
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Authors:  C H Robert; H Decker; B Richey; S J Gill; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1987-04       Impact factor: 11.205

4.  Co-operative interactions during protein folding.

Authors:  A Horovitz; A R Fersht
Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

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Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

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Authors:  Honglue Shi; Atul Rangadurai; Hala Abou Assi; Rohit Roy; David A Case; Daniel Herschlag; Joseph D Yesselman; Hashim M Al-Hashimi
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  6 in total

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4.  Protein Conformational Space at the Edge of Allostery: Turning a Nonallosteric Malate Dehydrogenase into an "Allosterized" Enzyme Using Evolution-Guided Punctual Mutations.

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Review 5.  The Mediator complex as a master regulator of transcription by RNA polymerase II.

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  6 in total

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