Literature DB >> 24806916

Mechanical operation and intersubunit coordination of ring-shaped molecular motors: insights from single-molecule studies.

Shixin Liu1, Gheorghe Chistol2, Carlos Bustamante3.   

Abstract

Ring NTPases represent a large and diverse group of proteins that couple their nucleotide hydrolysis activity to a mechanical task involving force generation and some type of transport process in the cell. Because of their shape, these enzymes often operate as gates that separate distinct cellular compartments to control and regulate the passage of chemical species across them. In this manner, ions and small molecules are moved across membranes, biopolymer substrates are segregated between cells or moved into confined spaces, double-stranded nucleic acids are separated into single strands to provide access to the genetic information, and polypeptides are unfolded and processed for recycling. Here we review the recent advances in the characterization of these motors using single-molecule manipulation and detection approaches. We describe the various mechanisms by which ring motors convert chemical energy to mechanical force or torque and coordinate the activities of individual subunits that constitute the ring. We also examine how single-molecule studies have contributed to a better understanding of the structural elements involved in motor-substrate interaction, mechanochemical coupling, and intersubunit coordination. Finally, we discuss how these molecular motors tailor their operation-often through regulation by other cofactors-to suit their unique biological functions.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24806916      PMCID: PMC4017299          DOI: 10.1016/j.bpj.2014.03.029

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  127 in total

1.  Mutations altering a structurally conserved loop-helix-loop region of a viral packaging motor change DNA translocation velocity and processivity.

Authors:  James M Tsay; Jean Sippy; Damian DelToro; Benjamin T Andrews; Bonnie Draper; Venigalla Rao; Carlos E Catalano; Michael Feiss; Douglas E Smith
Journal:  J Biol Chem       Date:  2010-06-04       Impact factor: 5.157

2.  Sequence-specific assembly of FtsK hexamers establishes directional translocation on DNA.

Authors:  James E Graham; David J Sherratt; Mark D Szczelkun
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

3.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

4.  DnaB helicase activity is modulated by DNA geometry and force.

Authors:  Noah Ribeck; Daniel L Kaplan; Irina Bruck; Omar A Saleh
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

5.  Phosphate release in F1-ATPase catalytic cycle follows ADP release.

Authors:  Rikiya Watanabe; Ryota Iino; Hiroyuki Noji
Journal:  Nat Chem Biol       Date:  2010-09-26       Impact factor: 15.040

Review 6.  Moving into the cell: single-molecule studies of molecular motors in complex environments.

Authors:  Claudia Veigel; Christoph F Schmidt
Journal:  Nat Rev Mol Cell Biol       Date:  2011-02-16       Impact factor: 94.444

Review 7.  Insight into helicase mechanism and function revealed through single-molecule approaches.

Authors:  Jaya G Yodh; Michael Schlierf; Taekjip Ha
Journal:  Q Rev Biophys       Date:  2010-08-04       Impact factor: 5.318

8.  Uncoupling of sister replisomes during eukaryotic DNA replication.

Authors:  Hasan Yardimci; Anna B Loveland; Satoshi Habuchi; Antoine M van Oijen; Johannes C Walter
Journal:  Mol Cell       Date:  2010-12-10       Impact factor: 17.970

9.  Resolving stepping rotation in Thermus thermophilus H(+)-ATPase/synthase with an essentially drag-free probe.

Authors:  Shou Furuike; Masahiro Nakano; Kengo Adachi; Hiroyuki Noji; Kazuhiko Kinosita; Ken Yokoyama
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

10.  Active and passive mechanisms of helicases.

Authors:  Maria Manosas; Xu Guang Xi; David Bensimon; Vincent Croquette
Journal:  Nucleic Acids Res       Date:  2010-04-27       Impact factor: 16.971

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  25 in total

1.  NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions.

Authors:  Xiaobo Gu; Sun-Young Park; Marco Tonelli; Gabriel Cornilescu; Tianbing Xia; Dongping Zhong; Susan J Schroeder
Journal:  J Phys Chem Lett       Date:  2016-09-19       Impact factor: 6.475

2.  Mechanism of substrate translocation by a ring-shaped ATPase motor at millisecond resolution.

Authors:  Wen Ma; Klaus Schulten
Journal:  J Am Chem Soc       Date:  2015-02-19       Impact factor: 15.419

3.  Sequential allosteric mechanism of ATP hydrolysis by the CCT/TRiC chaperone is revealed through Arrhenius analysis.

Authors:  Ranit Gruber; Michael Levitt; Amnon Horovitz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

4.  Structural insights into the functional cycle of the ATPase module of the 26S proteasome.

Authors:  Marc Wehmer; Till Rudack; Florian Beck; Antje Aufderheide; Günter Pfeifer; Jürgen M Plitzko; Friedrich Förster; Klaus Schulten; Wolfgang Baumeister; Eri Sakata
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

Review 5.  Assessing heterogeneity in oligomeric AAA+ machines.

Authors:  Tatyana A Sysoeva
Journal:  Cell Mol Life Sci       Date:  2016-09-26       Impact factor: 9.261

6.  Warhammers for Peaceful Times.

Authors:  Piotr E Marszalek
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

Review 7.  Unpicking allosteric mechanisms of homo-oligomeric proteins by determining their successive ligand binding constants.

Authors:  Ranit Gruber; Amnon Horovitz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

Review 8.  Molecular switch-like regulation in motor proteins.

Authors:  Sara Tafoya; Carlos Bustamante
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

9.  The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages.

Authors:  Stephen C Harvey
Journal:  J Struct Biol       Date:  2014-12-05       Impact factor: 2.867

10.  Functional Dissection of a Viral DNA Packaging Machine's Walker B Motif.

Authors:  Damian delToro; David Ortiz; Mariam Ordyan; Joshua Pajak; Jean Sippy; Alexis Catala; Choon-Seok Oh; Amber Vu; Gaurav Arya; Douglas E Smith; Carlos E Catalano; Michael Feiss
Journal:  J Mol Biol       Date:  2019-08-30       Impact factor: 5.469

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