Literature DB >> 31699334

GroEL Allostery Illuminated by a Relationship between the Hill Coefficient and the MWC Model.

Ranit Gruber1, Tridib Mondal1, Amnon Horovitz2.   

Abstract

A fundamental problem that has hindered the use of the classic Monod-Wyman-Changuex (MWC) allosteric model since its introduction is that it has been difficult to determine the values of its parameters in a reliable manner because they are correlated with each other and sensitive to the data-fitting method. Consequently, experimental data are often fitted to the Hill equation, which provides a measure of cooperativity but no insights into its origin. In this work, we derived a general relationship between the value of the Hill coefficient and the parameters of the MWC model. It is shown that this relationship can be used to select the best estimate of the true combination of the MWC parameter values from all the possible ones found to fit the data. Here, this approach was applied to fits to the MWC model of curves of the fraction of GroEL molecules in the high-affinity (R) state for ATP as a function of ATP concentration. Such curves were collected at different temperatures, thereby providing insight into the hydrophobic effect associated with the ATP-promoted allosteric switch of GroEL. More generally, the relationship derived here should facilitate future thermodynamic analysis of other MWC-type allosteric systems.
Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Year:  2019        PMID: 31699334      PMCID: PMC7019020          DOI: 10.1016/j.bpj.2019.10.013

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

8.  The crystal structure of the bacterial chaperonin GroEL at 2.8 A.

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9.  On the nature of allosteric transitions: implications of non-exclusive ligand binding.

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10.  Statistical mechanics of Monod-Wyman-Changeux (MWC) models.

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Journal:  J Mol Biol       Date:  2013-03-14       Impact factor: 5.469

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  1 in total

1.  Partitioning the Hill coefficient into contributions from ligand-promoted conformational changes and subunit heterogeneity.

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  1 in total

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