Literature DB >> 29675301

Deep learning approach for the detection and quantification of intraretinal cystoid fluid in multivendor optical coherence tomography.

Freerk G Venhuizen1,2, Bram van Ginneken1, Bart Liefers1,2, Freekje van Asten2, Vivian Schreur2, Sascha Fauser3,4, Carel Hoyng2, Thomas Theelen1,2, Clara I Sánchez1,2.   

Abstract

We developed a deep learning algorithm for the automatic segmentation and quantification of intraretinal cystoid fluid (IRC) in spectral domain optical coherence tomography (SD-OCT) volumes independent of the device used for acquisition. A cascade of neural networks was introduced to include prior information on the retinal anatomy, boosting performance significantly. The proposed algorithm approached human performance reaching an overall Dice coefficient of 0.754 ± 0.136 and an intraclass correlation coefficient of 0.936, for the task of IRC segmentation and quantification, respectively. The proposed method allows for fast quantitative IRC volume measurements that can be used to improve patient care, reduce costs, and allow fast and reliable analysis in large population studies.

Entities:  

Keywords:  (100.2960) Image analysis; (100.4996) Pattern recognition, neural networks; (110.4500) Optical coherence tomography; (170.4470) Clinical applications; (170.4470) Ophthalmology

Year:  2018        PMID: 29675301      PMCID: PMC5905905          DOI: 10.1364/BOE.9.001545

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  48 in total

1.  General Bayesian estimation for speckle noise reduction in optical coherence tomography retinal imagery.

Authors:  Alexander Wong; Akshaya Mishra; Kostadinka Bizheva; David A Clausi
Journal:  Opt Express       Date:  2010-04-12       Impact factor: 3.894

2.  Delineating fluid-filled region boundaries in optical coherence tomography images of the retina.

Authors:  Delia Cabrera Fernández
Journal:  IEEE Trans Med Imaging       Date:  2005-08       Impact factor: 10.048

3.  Comparison of PDE-based nonlinear diffusion approaches for image enhancement and denoising in optical coherence tomography.

Authors:  Harry M Salinas; Delia Cabrera Fernández
Journal:  IEEE Trans Med Imaging       Date:  2007-06       Impact factor: 10.048

4.  ReLayNet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks.

Authors:  Abhijit Guha Roy; Sailesh Conjeti; Sri Phani Krishna Karri; Debdoot Sheet; Amin Katouzian; Christian Wachinger; Nassir Navab
Journal:  Biomed Opt Express       Date:  2017-07-13       Impact factor: 3.732

5.  Fully Automated Detection and Quantification of Macular Fluid in OCT Using Deep Learning.

Authors:  Thomas Schlegl; Sebastian M Waldstein; Hrvoje Bogunovic; Franz Endstraßer; Amir Sadeghipour; Ana-Maria Philip; Dominika Podkowinski; Bianca S Gerendas; Georg Langs; Ursula Schmidt-Erfurth
Journal:  Ophthalmology       Date:  2017-12-08       Impact factor: 12.079

6.  Three-dimensional segmentation of fluid-associated abnormalities in retinal OCT: probability constrained graph-search-graph-cut.

Authors:  Xinjian Chen; Meindert Niemeijer; Li Zhang; Kyungmoo Lee; Michael D Abramoff; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2012-03-19       Impact factor: 10.048

7.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

Review 8.  A paradigm shift in imaging biomarkers in neovascular age-related macular degeneration.

Authors:  Ursula Schmidt-Erfurth; Sebastian M Waldstein
Journal:  Prog Retin Eye Res       Date:  2015-08-22       Impact factor: 21.198

Review 9.  Guidelines for the management of neovascular age-related macular degeneration by the European Society of Retina Specialists (EURETINA).

Authors:  Ursula Schmidt-Erfurth; Victor Chong; Anat Loewenstein; Michael Larsen; Eric Souied; Reinier Schlingemann; Bora Eldem; Jordi Monés; Gisbert Richard; Francesco Bandello
Journal:  Br J Ophthalmol       Date:  2014-09       Impact factor: 4.638

10.  Automated segmentation of intraretinal cystoid fluid in optical coherence tomography.

Authors:  Gary R Wilkins; Odette M Houghton; Amy L Oldenburg
Journal:  IEEE Trans Biomed Eng       Date:  2012-01-16       Impact factor: 4.538

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  24 in total

1.  Development and validation of a deep learning algorithm for distinguishing the nonperfusion area from signal reduction artifacts on OCT angiography.

Authors:  Yukun Guo; Tristan T Hormel; Honglian Xiong; Bingjie Wang; Acner Camino; Jie Wang; David Huang; Thomas S Hwang; Yali Jia
Journal:  Biomed Opt Express       Date:  2019-06-12       Impact factor: 3.732

2.  Intraretinal fluid identification via enhanced maps using optical coherence tomography images.

Authors:  Plácido L Vidal; Joaquim de Moura; Jorge Novo; Manuel G Penedo; Marcos Ortega
Journal:  Biomed Opt Express       Date:  2018-09-11       Impact factor: 3.732

3.  Characterization of coronary artery pathological formations from OCT imaging using deep learning.

Authors:  Atefeh Abdolmanafi; Luc Duong; Nagib Dahdah; Ibrahim Ragui Adib; Farida Cheriet
Journal:  Biomed Opt Express       Date:  2018-09-21       Impact factor: 3.732

4.  Phase unwrapping based on a residual en-decoder network for phase images in Fourier domain Doppler optical coherence tomography.

Authors:  Chuanchao Wu; Zhengyu Qiao; Nan Zhang; Xiaochen Li; Jingfan Fan; Hong Song; Danni Ai; Jian Yang; Yong Huang
Journal:  Biomed Opt Express       Date:  2020-03-03       Impact factor: 3.732

5.  Joint Diabetic Macular Edema Segmentation and Characterization in OCT Images.

Authors:  Joaquim de Moura; Gabriela Samagaio; Jorge Novo; Pablo Almuina; María Isabel Fernández; Marcos Ortega
Journal:  J Digit Imaging       Date:  2020-10       Impact factor: 4.056

6.  A Deep Learning Approach for Automated Detection of Geographic Atrophy from Color Fundus Photographs.

Authors:  Tiarnan D Keenan; Shazia Dharssi; Yifan Peng; Qingyu Chen; Elvira Agrón; Wai T Wong; Zhiyong Lu; Emily Y Chew
Journal:  Ophthalmology       Date:  2019-06-11       Impact factor: 12.079

7.  Weakly supervised individual ganglion cell segmentation from adaptive optics OCT images for glaucomatous damage assessment.

Authors:  Somayyeh Soltanian-Zadeh; Kazuhiro Kurokawa; Zhuolin Liu; Furu Zhang; Osamah Saeedi; Daniel X Hammer; Donald T Miller; Sina Farsiu
Journal:  Optica       Date:  2021-05-04       Impact factor: 11.104

8.  Beyond Performance Metrics: Automatic Deep Learning Retinal OCT Analysis Reproduces Clinical Trial Outcome.

Authors:  Jessica Loo; Traci E Clemons; Emily Y Chew; Martin Friedlander; Glenn J Jaffe; Sina Farsiu
Journal:  Ophthalmology       Date:  2019-12-23       Impact factor: 12.079

9.  Deep learning-based classification and segmentation of retinal cavitations on optical coherence tomography images of macular telangiectasia type 2.

Authors:  Jessica Loo; Cindy X Cai; John Choong; Emily Y Chew; Martin Friedlander; Glenn J Jaffe; Sina Farsiu
Journal:  Br J Ophthalmol       Date:  2020-11-23       Impact factor: 4.638

10.  Automated Quantitative Assessment of Retinal Fluid Volumes as Important Biomarkers in Neovascular Age-Related Macular Degeneration.

Authors:  Tiarnan D L Keenan; Usha Chakravarthy; Anat Loewenstein; Emily Y Chew; Ursula Schmidt-Erfurth
Journal:  Am J Ophthalmol       Date:  2021-02-15       Impact factor: 5.258

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