Literature DB >> 33229343

Deep learning-based classification and segmentation of retinal cavitations on optical coherence tomography images of macular telangiectasia type 2.

Jessica Loo1, Cindy X Cai2, John Choong2, Emily Y Chew3, Martin Friedlander4,5, Glenn J Jaffe2, Sina Farsiu6,2.   

Abstract

AIM: To develop a fully automatic algorithm to segment retinal cavitations on optical coherence tomography (OCT) images of macular telangiectasia type 2 (MacTel2).
METHODS: The dataset consisted of 99 eyes from 67 participants enrolled in an international, multicentre, phase 2 MacTel2 clinical trial (NCT01949324). Each eye was imaged with spectral-domain OCT at three time points over 2 years. Retinal cavitations were manually segmented by a trained Reader and the retinal cavitation volume was calculated. Two convolutional neural networks (CNNs) were developed that operated in sequential stages. In the first stage, CNN1 classified whether a B-scan contained any retinal cavitations. In the second stage, CNN2 segmented the retinal cavitations in a B-scan. We evaluated the performance of the proposed method against alternative methods using several performance metrics and manual segmentations as the gold standard.
RESULTS: The proposed method was computationally efficient and accurately classified and segmented retinal cavitations on OCT images, with a sensitivity of 0.94, specificity of 0.80 and average Dice similarity coefficient of 0.94±0.07 across all time points. The proposed method produced measurements that were highly correlated with the manual measurements of retinal cavitation volume and change in retinal cavitation volume over time.
CONCLUSION: The proposed method will be useful to help clinicians quantify retinal cavitations, assess changes over time and further investigate the clinical significance of these early structural changes observed in MacTel2. © Author(s) (or their employer(s)) 2022. No commercial re-use. See rights and permissions. Published by BMJ.

Entities:  

Keywords:  imaging; retina

Mesh:

Year:  2020        PMID: 33229343      PMCID: PMC8365558          DOI: 10.1136/bjophthalmol-2020-317131

Source DB:  PubMed          Journal:  Br J Ophthalmol        ISSN: 0007-1161            Impact factor:   4.638


  36 in total

1.  Fully automatic software for retinal thickness in eyes with diabetic macular edema from images acquired by cirrus and spectralis systems.

Authors:  Joo Yong Lee; Stephanie J Chiu; Pratul P Srinivasan; Joseph A Izatt; Cynthia A Toth; Sina Farsiu; Glenn J Jaffe
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-11-15       Impact factor: 4.799

2.  Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema.

Authors:  Stephanie J Chiu; Michael J Allingham; Priyatham S Mettu; Scott W Cousins; Joseph A Izatt; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2015-03-09       Impact factor: 3.732

3.  Optical coherence tomography.

Authors:  D Huang; E A Swanson; C P Lin; J S Schuman; W G Stinson; W Chang; M R Hee; T Flotte; K Gregory; C A Puliafito
Journal:  Science       Date:  1991-11-22       Impact factor: 47.728

4.  ReLayNet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks.

Authors:  Abhijit Guha Roy; Sailesh Conjeti; Sri Phani Krishna Karri; Debdoot Sheet; Amin Katouzian; Christian Wachinger; Nassir Navab
Journal:  Biomed Opt Express       Date:  2017-07-13       Impact factor: 3.732

5.  Fully Automated Detection and Quantification of Macular Fluid in OCT Using Deep Learning.

Authors:  Thomas Schlegl; Sebastian M Waldstein; Hrvoje Bogunovic; Franz Endstraßer; Amir Sadeghipour; Ana-Maria Philip; Dominika Podkowinski; Bianca S Gerendas; Georg Langs; Ursula Schmidt-Erfurth
Journal:  Ophthalmology       Date:  2017-12-08       Impact factor: 12.079

6.  "En face" OCT imaging of the IS/OS junction line in type 2 idiopathic macular telangiectasia.

Authors:  Ferenc B Sallo; Tunde Peto; Catherine Egan; Ute E K Wolf-Schnurrbusch; Traci E Clemons; Mark C Gillies; Daniel Pauleikhoff; Gary S Rubin; Emily Y Chew; Alan C Bird
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-09-14       Impact factor: 4.799

7.  Ciliary neurotrophic factor for macular telangiectasia type 2: results from a phase 1 safety trial.

Authors:  Emily Y Chew; Traci E Clemons; Tunde Peto; Ferenc B Sallo; Avner Ingerman; Weng Tao; Lawrence Singerman; Steven D Schwartz; Neal S Peachey; Alan C Bird
Journal:  Am J Ophthalmol       Date:  2014-12-19       Impact factor: 5.258

8.  Deep learning approach for the detection and quantification of intraretinal cystoid fluid in multivendor optical coherence tomography.

Authors:  Freerk G Venhuizen; Bram van Ginneken; Bart Liefers; Freekje van Asten; Vivian Schreur; Sascha Fauser; Carel Hoyng; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2018-03-07       Impact factor: 3.732

9.  The IS/OS junction layer in the natural history of type 2 idiopathic macular telangiectasia.

Authors:  Ferenc B Sallo; Tunde Peto; Catherine Egan; Ute E K Wolf-Schnurrbusch; Traci E Clemons; Mark C Gillies; Daniel Pauleikhoff; Gary S Rubin; Emily Y Chew; Alan C Bird
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-11-29       Impact factor: 4.799

10.  Deep longitudinal transfer learning-based automatic segmentation of photoreceptor ellipsoid zone defects on optical coherence tomography images of macular telangiectasia type 2.

Authors:  Jessica Loo; Leyuan Fang; David Cunefare; Glenn J Jaffe; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2018-05-16       Impact factor: 3.732

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  2 in total

1.  Three-Dimensional Volume Calculation of Intrachoroidal Cavitation Using Deep-Learning-Based Noise Reduction of Optical Coherence Tomography.

Authors:  Satoko Fujimoto; Atsuya Miki; Kazuichi Maruyama; Song Mei; Zaixing Mao; Zhenguo Wang; Kinpui Chan; Kohji Nishida
Journal:  Transl Vis Sci Technol       Date:  2022-07-08       Impact factor: 3.048

2.  VALIDATION OF A DEEP LEARNING-BASED ALGORITHM FOR SEGMENTATION OF THE ELLIPSOID ZONE ON OPTICAL COHERENCE TOMOGRAPHY IMAGES OF AN USH2A-RELATED RETINAL DEGENERATION CLINICAL TRIAL.

Authors:  Jessica Loo; Glenn J Jaffe; Jacque L Duncan; David G Birch; Sina Farsiu
Journal:  Retina       Date:  2022-07-01       Impact factor: 3.975

  2 in total

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