| Literature DB >> 29662037 |
Andrey A Toropov1, Natalia Sizochenko2,3, Alla P Toropova4, Jerzy Leszczynski5.
Abstract
Zeta potential indirectly reflects a charge of the surface of nanoparticles in solutions and could be used to represent the stability of the colloidal solution. As processes of synthesis, testing and evaluation of new nanomaterials are expensive and time-consuming, so it would be helpful to estimate an approximate range of properties for untested nanomaterials using computational modeling. We collected the largest dataset of zeta potential measurements of bare metal oxide nanoparticles in water (87 data points). The dataset was used to develop quantitative structure-property relationship (QSPR) models. Essential features of nanoparticles were represented using a modified simplified molecular input line entry system (SMILES). SMILES strings reflected the size-dependent behavior of zeta potentials, as the considered quasi-SMILES modification included information about both chemical composition and the size of the nanoparticles. Three mathematical models were generated using the Monte Carlo method, and their statistical quality was evaluated (R² for the training set varied from 0.71 to 0.87; for the validation set, from 0.67 to 0.82; root mean square errors for both training and validation sets ranged from 11.3 to 17.2 mV). The developed models were analyzed and linked to aggregation effects in aqueous solutions.Entities:
Keywords: CORAL; QSPR; descriptors; metal oxide nanoparticles; modeling; nano-QSPR; quasi-SMILES; zeta potential
Year: 2018 PMID: 29662037 PMCID: PMC5923573 DOI: 10.3390/nano8040243
Source DB: PubMed Journal: Nanomaterials (Basel) ISSN: 2079-4991 Impact factor: 5.076
Experimental data on zeta potentials and ordinary SMILES codes.
| # | NANOPARTICLE | SMILES | Nominal Size (nm) | Size in H2O (nm) | ζ in H2O |
|---|---|---|---|---|---|
| 1 | Al2O3 | O=[Al]O[Al]=O | 11.40 | 94.70 | 39.20 |
| 2 | Al2O3 | O=[Al]O[Al]=O | 60.00 | 763.00 | 33.10 |
| 3 | Al2O3 | O=[Al]O[Al]=O | 13.56 | 312.60 | 38.00 |
| 4 | Al2O3 | O=[Al]O[Al]=O | 30.00 | 210.00 | 43.00 |
| 5 | Al2O3 | O=[Al]O[Al]=O | 40.00 | 237.00 | 36.20 |
| 6 | Al2O3 | O=[Al]O[Al]=O | 55.00 | 330.00 | 30.30 |
| 7 | Bi2O3 | O=[Bi]O[Bi]=O | 144.00 | 4084.00 | −16.50 |
| 8 | CeO2 | O=[Ce][Ce]=O | 9.70 | 165.40 | 41.20 |
| 9 | CeO2 | O=[Ce][Ce]=O | 13.04 | 200.70 | 26.50 |
| 10 | CeO2 | O=[Ce][Ce]=O | 18.30 | 197.60 | 21.40 |
| 11 | CeO2 | O=[Ce][Ce]=O | 8.00 | 2610.00 | 15.00 |
| 12 | Co3O4 | [Co]=O.O=[Co]O[Co]=O | 11.50 | 99.20 | 23.00 |
| 13 | Co3O4 | [Co]=O.O=[Co]O[Co]=O | 10.00 | 174.50 | 24.60 |
| 14 | CoO | [Co]=O | 71.80 | 184.80 | 21.60 |
| 15 | CoO | [Co]=O | 55.00 | 262.00 | 17.50 |
| 16 | Cr2O3 | O=[Cr]O[Cr]=O | 193.00 | 256.40 | −32.60 |
| 17 | Cr2O3 | O=[Cr]O[Cr]=O | 47.00 | 426.00 | −12.00 |
| 18 | CuO | [Cu]=O | 23.10 | 171.70 | 37.40 |
| 19 | CuO | [Cu]=O | 12.50 | 130.00 | 17.00 |
| 20 | CuO | [Cu]=O | 12.80 | 263.30 | 7.60 |
| 21 | CuO | [Cu]=O | 28.00 | 285.00 | 24.40 |
| 22 | Dy2O3 | O=[Dy]O[Dy]=O | 6.00 | 565.20 | 50.60 |
| 23 | Fe2O3 | O=[Fe]O[Fe]=O | 30.00 | 942.00 | −22.80 |
| 24 | Fe2O3 | O=[Fe]O[Fe]=O | 20.00 | 1565.00 | −11.20 |
| 25 | Fe2O3 | O=[Fe]O[Fe]=O | 12.30 | 144.70 | −2.10 |
| 26 | Fe2O3 | O=[Fe]O[Fe]=O | 68.00 | 6000.00 | −6.30 |
| 27 | Fe3O4 | O=[Fe].O=[Fe]O[Fe]=O | 9.50 | 128.00 | 22.10 |
| 28 | Fe3O4 | O=[Fe].O=[Fe]O[Fe]=O | 20.00 | 685.00 | −17.70 |
| 29 | Fe3O4 | O=[Fe].O=[Fe]O[Fe]=O | 119.00 | 127.00 | 8.33 |
| 30 | Fe3O4 | O=[Fe].O=[Fe]O[Fe]=O | 12.30 | 198.40 | −2.10 |
| 31 | Gd2O3 | O=[Gd]O[Gd]=O | 43.80 | 195.70 | 6.50 |
| 32 | HfO2 | O=[Hf]=O | 28.40 | 291.80 | 33.50 |
| 33 | In2O3 | O=[In]O[In]=O | 35.80 | 212.70 | 57.20 |
| 34 | In2O3 | O=[In]O[In]=O | 59.60 | 192.20 | 61.90 |
| 35 | In2O3 | O=[In]O[In]=O | 60.00 | 308.00 | 22.60 |
| 36 | In2O3 | O=[In]O[In]=O | 17.00 | 391.00 | −31.60 |
| 37 | La2O3 | O=[La]O[La]=O | 24.60 | 211.00 | 54.30 |
| 38 | La2O3 | O=[La]O[La]=O | 65.00 | 508.00 | −3.60 |
| 39 | MgO | O=[Mg] | 13.60 | 1964.00 | 6.90 |
| 40 | Mn2O3 | O=[Mn]O[Mn]=O | 51.50 | 268.80 | −46.10 |
| 41 | Mn3O4 | O=[Mn]O[Mn]O[Mn]=O | 15.20 | 395.00 | −14.40 |
| 42 | Ni2O3 | O=[Ni]O[Ni]=O | 140.60 | 311.40 | 32.20 |
| 43 | NiO | [Ni]=O | 5.30 | 209.70 | 48.90 |
| 44 | NiO | [Ni]=O | 30.00 | 1634.00 | 13.30 |
| 45 | NiO | [Ni]=O | 13.10 | 228.00 | 27.60 |
| 46 | NiO | [Ni]=O | 14.00 | 399.00 | 26.00 |
| 47 | Sb2O3 | O=[Sb]O[Sb]=O | 20.80 | 125.00 | −24.20 |
| 48 | Sb2O3 | O=[Sb]O[Sb]=O | 11.80 | 147.60 | −35.30 |
| 49 | Sb2O3 | O=[Sb]O[Sb]=O | 84.00 | 619.00 | −20.70 |
| 50 | SiO2 | O=[Si]=O | 6.20 | 373.50 | −29.20 |
| 51 | SiO2 | O=[Si]=O | 7.80 | 148.00 | −33.50 |
| 52 | SiO2 | O=[Si]=O | 114.00 | 123.00 | −43.00 |
| 53 | SiO2 | O=[Si]=O | 13.50 | 113.40 | −31.80 |
| 54 | SiO2 | O=[Si]=O | 35.00 | 28.90 | −23.10 |
| 55 | SiO2 | O=[Si]=O | 51.00 | 52.90 | −30.10 |
| 56 | SiO2 | O=[Si]=O | 110.00 | 121.00 | −33.10 |
| 57 | SiO2 | O=[Si]=O | 420.00 | 703.00 | −39.00 |
| 58 | SiO2 | O=[Si]=O | 20.00 | 1230.00 | −29.80 |
| 59 | SnO2 | O=[Sn]=O | 62.40 | 203.70 | −38.80 |
| 60 | SnO2 | O=[Sn]=O | 15.00 | 3971.00 | −21.10 |
| 61 | TiO2 | O=[Ti]=O | 30.50 | 358.20 | −16.50 |
| 62 | TiO2 | O=[Ti]=O | 121.2 | 171.00 | −13.50 |
| 63 | TiO2 | O=[Ti]=O | 50.00 | 550.00 | −18.90 |
| 64 | TiO2 | O=[Ti]=O | 3.59 | 30.60 | 47.00 |
| 65 | TiO2 | O=[Ti]=O | 108.00 | 117.00 | −4.64 |
| 66 | TiO2 | O=[Ti]=O | 12.60 | 166.00 | −19.40 |
| 67 | TiO2 | O=[Ti]=O | 10.00 | 116.00 | 15.00 |
| 68 | TiO2 | O=[Ti]=O | 16.00 | 1500.00 | 7.09 |
| 69 | TiO2 | O=[Ti]=O | 100.00 | 1510.00 | 4.07 |
| 70 | TiO2 | O=[Ti]=O | 50.00 | 1610.00 | 1.77 |
| 71 | TiO2 | O=[Ti]=O | 5.00 | 2710.00 | −3.75 |
| 72 | TiO2 | O=[Ti]=O | 42.00 | 748.00 | −10.70 |
| 73 | WO3 | O=[W](=O)=O | 10.60 | 62.80 | −45.20 |
| 74 | WO3 | O=[W](=O)=O | 16.60 | 176.60 | −61.30 |
| 75 | WO3 | O=[W](=O)=O | 15.90 | 545.50 | −54.40 |
| 76 | Y2O3 | O=[Y]O[Y]=O | 32.70 | 312.20 | 42.70 |
| 77 | Y2O3 | O=[Y]O[Y]=O | 38.00 | 357.00 | 16.30 |
| 78 | Yb2O3 | O=[Yb]O[Yb]=O | 61.70 | 230.70 | 9.90 |
| 79 | ZnO | [Zn]=O | 20.00 | 165.00 | 16.40 |
| 80 | ZnO | [Zn]=O | 30.00 | 501.00 | −46.80 |
| 81 | ZnO | [Zn]=O | 20.00 | 759.00 | 0.017 |
| 82 | ZnO | [Zn]=O | 36.14 | 532.00 | 20.30 |
| 83 | ZnO | [Zn]=O | 22.60 | 204.50 | 28.80 |
| 84 | ZnO | [Zn]=O | 13.00 | 413.00 | −15.00 |
| 85 | ZnO | [Zn]=O | 71.00 | 1614.00 | −20.90 |
| 86 | ZrO2 | O=[Zr]=O | 40.10 | 306.50 | −12.80 |
| 87 | ZrO2 | O=[Zr]=O | 27.00 | 2337.00 | −6.90 |
Scheme 1The scheme of converting variables from Table 1 into discrete parameters.
Figure 1Distribution of zeta potential values.
Correlation weights of attributes of quasi-SMILES for developed models.
| SPLIT 1 | SPLIT 2 | SPLIT 3 | |||
|---|---|---|---|---|---|
| CW( | CW( | CW( | |||
| %11......... | 0.80800 | %11......... | 1.69179 | %11......... | 0.37780 |
| %12......... | 1.06400 | %12......... | 2.12261 | %12......... | 0.00137 |
| %13......... | 2.25071 | %13......... | 4.00196 | %13......... | 1.24844 |
| %14......... | −0.05794 | %14......... | 1.12049 | %14......... | −0.05971 |
| %15......... | 1.99908 | %15......... | 2.18310 | %15......... | 0.62086 |
| %16......... | 2.49597 | %17......... | 2.81530 | %16......... | 0.00000 |
| %17......... | 1.37532 | %18......... | 0.00000 | %17......... | 0.00000 |
| %18......... | 0.00000 | %19......... | 0.18353 | %18......... | −0.68769 |
| %19......... | 0.00000 | %20......... | 0.00261 | %19......... | −0.43846 |
| %20......... | 0.00000 | %21......... | 1.55940 | %20......... | 0.00000 |
| %24......... | −1.18511 | %24......... | 0.00000 | %21......... | 0.00000 |
| %40......... | 0.00000 | %40......... | 0.00000 | %24......... | 0.00000 |
| %51......... | 2.44195 | %51......... | 1.62637 | %40......... | 0.00000 |
| %52......... | −0.06464 | %52......... | −0.31720 | %51......... | 1.81351 |
| %53......... | 1.19226 | %53......... | −0.37875 | %52......... | 0.24603 |
| %54......... | 0.43457 | %54......... | −0.75096 | %53......... | 0.74900 |
| %55......... | 1.18553 | %55......... | −1.56470 | %54......... | 0.00000 |
| %57......... | 2.68648 | %57......... | 0.00000 | %55......... | 0.00000 |
| %58......... | 1.49714 | %58......... | 0.25164 | %57......... | 0.00000 |
| %59......... | 0.00000 | %60......... | 0.00000 | %58......... | 0.31647 |
| %60......... | −1.62667 | %63......... | 0.80912 | %62......... | 0.00000 |
| %62......... | 0.00000 | %64......... | 0.87088 | %63......... | 0.31311 |
| %70......... | 4.87656 | %71......... | 0.43610 | %70......... | 3.18594 |
| %80......... | 0.00000 | (........... | −0.94127 | %71......... | 0.00000 |
| (........... | −2.18987 | =........... | −1.49711 | %80......... | 0.00000 |
| =........... | 0.37657 | Al.......... | 1.93437 | (........... | 0.00000 |
| Al.......... | 0.00000 | Bi.......... | −0.18907 | =........... | −2.74671 |
| Ce.......... | −0.37460 | Ce.......... | 1.06608 | Al.......... | 1.25135 |
| Co.......... | −1.06410 | Co.......... | 0.31118 | Bi.......... | 0.00000 |
| Cr.......... | −0.12456 | Cr.......... | 0.00000 | Ce.......... | 1.12551 |
| Cu.......... | −0.75250 | Cu.......... | 2.50088 | Co.......... | 0.69227 |
| Fe.......... | −1.50240 | Fe.......... | 0.18254 | Cr.......... | 0.31466 |
| Dy.......... | 1.31505 | Dy.......... | 2.93269 | Cu.......... | 1.94212 |
| Gd.......... | −1.68804 | Hf.......... | 5.37088 | Fe.......... | 0.24768 |
| Hf.......... | 0.00000 | O........... | 0.19036 | Dy.......... | 0.00000 |
| O........... | −0.50138 | In.......... | 0.93871 | Hf.......... | 5.75412 |
| In.......... | −0.55827 | La.......... | 0.00000 | O........... | 0.49842 |
| La.......... | −1.30825 | Mg.......... | 0.00000 | In.......... | 0.62411 |
| Mg.......... | 1.62027 | Mn.......... | −0.99685 | La.......... | 0.56389 |
| Mn.......... | 0.00000 | Ni.......... | 3.49511 | Mn.......... | −0.87592 |
| Ni.......... | 1.43678 | W........... | −1.31268 | Ni.......... | 1.93411 |
| W........... | −2.06470 | Sb.......... | 0.00000 | W........... | 0.00000 |
| Sb.......... | −2.12939 | Si.......... | −2.06057 | Sb.......... | −1.19208 |
| Si.......... | −5.56503 | Y........... | 0.00000 | Si.......... | 0.43778 |
| Y........... | 0.00000 | Sn.......... | 0.00000 | Y........... | 0.00000 |
| Sn.......... | −6.93877 | Ti.......... | 1.62433 | Sn.......... | −0.81116 |
| Ti.......... | −2.25298 | [........... | 0.62653 | Ti.......... | 2.74678 |
| [........... | −0.06193 | ^........... | 0.62086 | [........... | 1.00212 |
| ^........... | 2.49929 | Yb.......... | 0.00000 | ^........... | −0.69017 |
| Yb.......... | 0.00000 | Zn.......... | 0.19212 | Yb.......... | 0.00000 |
| Zn.......... | −3.30812 | - | - | Zn.......... | 0.00000 |
| Zr.......... | −2.81327 | - | - | Zr.......... | 2.18349 |
The statistical characteristics of developed models.
| SPLIT | Set | |||||||
|---|---|---|---|---|---|---|---|---|
| 1 | training | 28 | 0.8257 | 0.9045 | 0.7993 | 12.2 | 7.71 | 123 |
| invisible training | 27 | 0.5511 | 0.6809 | 0.4812 | 21.2 | 16.7 | 31 | |
| calibration | 16 | 0.5888 | 0.7065 | 0.4950 | 24.8 | 19.7 | 20 | |
| validation | 16 | 0.8213 | - | 0.7814 | 15.8 | 11.6 | - | |
| 2 | training | 25 | 0.8668 | 0.9286 | 0.8518 | 11.3 | 7.06 | 150 |
| invisible training | 20 | 0.5258 | 0.7195 | 0.4508 | 25.6 | 21.4 | 20 | |
| calibration | 21 | 0.6121 | 0.7583 | 0.5461 | 20.2 | 15.5 | 30 | |
| validation | 21 | 0.7268 | - | 0.6694 | 13.1 | 11.7 | - | |
| 3 | training | 26 | 0.7139 | 0.8331 | 0.6802 | 15.9 | 11.2 | 60 |
| invisible training | 23 | 0.7139 | 0.7968 | 0.6679 | 22.9 | 18.1 | 52 | |
| calibration | 19 | 0.6789 | 0.8078 | 0.6259 | 17.7 | 13.4 | 36 | |
| validation | 19 | 0.6707 | - | 0.6112 | 17.2 | 14.7 | - |
Attribute calculation of DCW(1,30) for O=[Al]O[Al]=O%15%54.
| Attributes of Quasi-SMILES, | CW( | |||
|---|---|---|---|---|
| O........... | −0.5014 | 28 | 27 | 16 |
| =........... | 0.3766 | 28 | 27 | 16 |
| [........... | −0.0619 | 28 | 27 | 16 |
| Al.......... | 0.000 | 0 | 5 | 0 |
| [........... | −0.0619 | 28 | 27 | 16 |
| O........... | −0.5014 | 28 | 27 | 16 |
| [........... | −0.0619 | 28 | 27 | 16 |
| Al.......... | 0.000 | 0 | 5 | 0 |
| [........... | −0.0619 | 28 | 27 | 16 |
| =........... | 0.3766 | 28 | 27 | 16 |
| O........... | −0.5014 | 28 | 27 | 16 |
| %15......... | 1.9991 | 3 | 4 | 2 |
| %54......... | 0.4346 | 1 | 3 | 1 |
CW(A) is the correlation weight for certain quasi-SMILES attribute, Nt is the number of A in the training set, Ni is the number of A in the invisible training set, and Nc is the number of A in the calibration set. DCW: descriptor of correlation weights.
Figure 2Observed-predicted diagrams for the developed models. Model 1: 1a—training in blue, validation in red; 1b—calibration; 1c—invisible training. Model 2: 2a—training in blue, validation in red; 2b—calibration; 2c—invisible training. Model 3: 3a—training in blue, validation in red; 3b—calibration; 3c—invisible training.
Factors related to the increase (positives) of to the decrease (negatives) of zeta-potentials.
| ATTRIBUTES OF QUASI-SMILES, | CW( | CW( | CW( |
|---|---|---|---|
| SPLIT 1 | |||
| %11......... | 0.56499 | 0.30946 | 0.68722 |
| %51......... | 3.24897 | 2.25246 | 2.62163 |
| %12......... | 0.99548 | 0.56358 | 0.99608 |
| %53......... | 1.62537 | 0.94188 | 1.43373 |
| %58......... | 1.81634 | 1.25070 | 1.56032 |
| %13......... | 2.49862 | 1.69067 | 2.18703 |
| %15......... | 2.37600 | 1.43252 | 2.00299 |
| %16......... | 2.93845 | 2.25077 | 2.55826 |
| %17......... | 1.31143 | 0.87860 | 1.37092 |
| O........... | −1.37959 | −0.37307 | −0.25319 |
| %52......... | −0.24995 | −0.18750 | −0.12144 |
| Ti.......... | −2.12736 | −2.30889 | −2.18847 |
| Fe.......... | −2.12005 | −1.50302 | −1.62577 |
| (........... | −1.99668 | −2.18891 | −1.37159 |
| W........... | −2.62409 | −2.12897 | −3.37530 |
| Sb.......... | −2.93941 | −2.31014 | −2.43815 |
| Si.......... | −6.87065 | −5.75002 | −5.87985 |
| Sn.......... | −8.68861 | −7.12619 | −7.37931 |
| Zn.......... | −4.87376 | −3.50015 | −4.37858 |
| SPLIT 2 | |||
| [........... | 1.80915 | 2.24881 | 0.87914 |
| %51......... | 2.49518 | 2.81286 | 1.87221 |
| %11......... | 1.56337 | 2.24885 | 1.68514 |
| %12......... | 1.99713 | 2.68668 | 2.56602 |
| %52......... | 0.05800 | 0.12815 | 0.12410 |
| Ti.......... | 2.12419 | 3.31268 | 1.93265 |
| %58......... | 0.18888 | 0.12581 | 0.12043 |
| %13......... | 4.12763 | 4.74576 | 4.18721 |
| %14......... | 1.18675 | 0.87720 | 1.00481 |
| Al.......... | 1.87368 | 2.37543 | 2.18986 |
| =........... | −2.25434 | −1.87704 | −2.00105 |
| %19......... | −0.62262 | −0.99988 | −0.43452 |
| %54......... | −0.24929 | −0.18668 | −0.74893 |
| %55......... | −1.30860 | −1.00469 | −2.49819 |
| (........... | −1.12284 | −1.43542 | −1.18555 |
| Mn.......... | −1.74769 | −2.25123 | −1.74980 |
| W........... | −0.37024 | −0.74538 | −0.87798 |
| Si.......... | −1.25313 | −1.50202 | −1.87854 |
| SPLIT 3 | |||
| [........... | 1.12589 | 0.74879 | 1.75183 |
| %51......... | 1.62591 | 1.37040 | 1.99838 |
| %11......... | 0.62966 | 0.37865 | 0.81600 |
| %52......... | 0.19018 | 0.12505 | 0.06011 |
| Ti.......... | 2.81440 | 2.30878 | 3.56507 |
| %12......... | 0.37221 | 0.12249 | 0.44184 |
| %15......... | 1.06671 | 0.62861 | 1.18785 |
| %13......... | 1.68571 | 1.12890 | 1.99793 |
| In.......... | 0.99791 | 0.74823 | 0.94120 |
| Al.......... | 1.55896 | 1.24856 | 1.74813 |
| =........... | −1.68634 | −1.93897 | −2.18763 |
| %19......... | −0.24851 | −0.37406 | −0.12216 |
| Sn.......... | −1.06603 | −0.74729 | −0.87290 |
| %18......... | −0.68596 | −0.74839 | −0.68558 |
| Mn.......... | −0.55928 | −0.49779 | −1.00283 |
| Sb.......... | −0.87118 | −0.74661 | −1.30958 |