Literature DB >> 29648537

The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome.

Emma A Morrison1, Samuel Bowerman2,3, Kelli L Sylvers1, Jeff Wereszczynski2,3, Catherine A Musselman1.   

Abstract

Histone tails harbor a plethora of post-translational modifications that direct the function of chromatin regulators, which recognize them through effector domains. Effector domain/histone interactions have been broadly studied, but largely using peptide fragments of histone tails. Here, we extend these studies into the nucleosome context and find that the conformation adopted by the histone H3 tails is inhibitory to BPTF PHD finger binding. Using NMR spectroscopy and MD simulations, we show that the H3 tails interact robustly but dynamically with nucleosomal DNA, substantially reducing PHD finger association. Altering the electrostatics of the H3 tail via modification or mutation increases accessibility to the PHD finger, indicating that PTM crosstalk can regulate effector domain binding by altering nucleosome conformation. Together, our results demonstrate that the nucleosome context has a dramatic impact on signaling events at the histone tails, and highlights the importance of studying histone binding in the context of the nucleosome.
© 2018, Morrison et al.

Entities:  

Keywords:  MD Simulation; NMR Spectroscopy; PHD Finger; chromosomes; gene expression; histone tail; human; methylation; molecular biophysics; nucleosome; structural biology

Mesh:

Substances:

Year:  2018        PMID: 29648537      PMCID: PMC5953545          DOI: 10.7554/eLife.31481

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  72 in total

1.  Acetylation increases the alpha-helical content of the histone tails of the nucleosome.

Authors:  X Wang; S C Moore; M Laszckzak; J Ausió
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

2.  Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics.

Authors:  Davit A Potoyan; Garegin A Papoian
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  The role of histone tails in the nucleosome: a computational study.

Authors:  Jochen Erler; Ruihan Zhang; Loukas Petridis; Xiaolin Cheng; Jeremy C Smith; Jörg Langowski
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

5.  A distinct switch in interactions of the histone H4 tail domain upon salt-dependent folding of nucleosome arrays.

Authors:  Sharon Pepenella; Kevin J Murphy; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2014-08-13       Impact factor: 5.157

6.  Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome.

Authors:  J Ausio; F Dong; K E van Holde
Journal:  J Mol Biol       Date:  1989-04-05       Impact factor: 5.469

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Installation of site-specific methylation into histones using methyl lysine analogs.

Authors:  Matthew D Simon
Journal:  Curr Protoc Mol Biol       Date:  2010-04

9.  Site-specific binding affinities within the H2B tail domain indicate specific effects of lysine acetylation.

Authors:  Xiaodong Wang; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2007-08-21       Impact factor: 5.157

10.  Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain.

Authors:  Daesung Kim; Bartlomiej J Blus; Vikas Chandra; Pengxiang Huang; Fraydoon Rastinejad; Sepideh Khorasanizadeh
Journal:  Nat Struct Mol Biol       Date:  2010-07-25       Impact factor: 15.369

View more
  39 in total

1.  NMR Analyses of Acetylated H2A.Z Isoforms Identify Differential Binding Interactions with the Bromodomain of the NURF Nucleosome Remodeling Complex.

Authors:  Noelle M Olson; Samantha Kroc; Jorden A Johnson; Huda Zahid; Peter D Ycas; Alice Chan; Jennifer R Kimbrough; Prakriti Kalra; Ernst Schönbrunn; William C K Pomerantz
Journal:  Biochemistry       Date:  2020-05-11       Impact factor: 3.162

2.  Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Implications for nucleotide excision repair.

Authors:  Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2019-12-28

3.  Unique Dynamics in Asymmetric macroH2A-H2A Hybrid Nucleosomes Result in Increased Complex Stability.

Authors:  Samuel Bowerman; Robert J Hickok; Jeff Wereszczynski
Journal:  J Phys Chem B       Date:  2019-01-08       Impact factor: 2.991

4.  Bulky Histone Modifications May Have an Oversized Role in Nucleosome Dynamics.

Authors:  Kona Orlandi; Jeffrey McKnight
Journal:  Bioessays       Date:  2019-12-03       Impact factor: 4.345

Review 5.  Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2019-03-12       Impact factor: 5.100

Review 6.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

7.  Elucidating the influence of linker histone variants on chromatosome dynamics and energetics.

Authors:  Dustin C Woods; Jeff Wereszczynski
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

Review 8.  Molecular recognition of nucleosomes by binding partners.

Authors:  Seyit Kale; Alexander Goncearenco; Yaroslav Markov; David Landsman; Anna R Panchenko
Journal:  Curr Opin Struct Biol       Date:  2019-04-13       Impact factor: 6.809

9.  Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.

Authors:  Fanfan Hao; Kevin J Murphy; Tomoya Kujirai; Naoki Kamo; Junko Kato; Masako Koyama; Akimitsu Okamato; Gosuke Hayashi; Hitoshi Kurumizaka; Jeffrey J Hayes
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

10.  Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET.

Authors:  Kathrin Lehmann; Suren Felekyan; Ralf Kühnemuth; Mykola Dimura; Katalin Tóth; Claus A M Seidel; Jörg Langowski
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.