Literature DB >> 25122771

A distinct switch in interactions of the histone H4 tail domain upon salt-dependent folding of nucleosome arrays.

Sharon Pepenella1, Kevin J Murphy1, Jeffrey J Hayes2.   

Abstract

The core histone tail domains mediate inter-nucleosomal interactions that direct folding and condensation of nucleosome arrays into higher-order chromatin structures. The histone H4 tail domain facilitates inter-array interactions by contacting both the H2A/H2B acidic patch and DNA of neighboring nucleosomes. Likewise, H4 tail-H2A contacts stabilize array folding. However, whether the H4 tail domains stabilize array folding via inter-nucleosomal interactions with the DNA of neighboring nucleosomes remains unclear. We utilized defined oligonucleosome arrays containing a single specialized nucleosome with a photo-inducible cross-linker in the N terminus of the H4 tail to characterize these interactions. We observed that the H4 tail participates exclusively in intra-array interactions with DNA in unfolded arrays. These interactions are diminished during array folding, yet no inter-nucleosome, intra-array H4 tail-DNA contacts are observed in condensed chromatin. However, we document contacts between the N terminus of the H4 tail and H2A. Installation of acetylation mimics known to disrupt H4-H2A surface interactions did not increase observance of H4-DNA inter-nucleosomal interactions. These results suggest the multiple functions of the H4 tail require targeted distinct interactions within condensed chromatin.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Chromatin; Chromatin Regulation; Chromatin Structure; Higher-order Chromatin Structure; Histone; Histone Tail Domain; Nucleosome

Mesh:

Substances:

Year:  2014        PMID: 25122771      PMCID: PMC4175364          DOI: 10.1074/jbc.M114.595140

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  31 in total

1.  The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states.

Authors:  Jun Y Fan; Faye Gordon; Karolin Luger; Jeffrey C Hansen; David John Tremethick
Journal:  Nat Struct Biol       Date:  2002-03

2.  Intra- and inter-nucleosomal protein-DNA interactions of the core histone tail domains in a model system.

Authors:  Chunyang Zheng; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2003-04-15       Impact factor: 5.157

3.  Role of the histone "tails" in the folding of oligonucleosomes depleted of histone H1.

Authors:  M Garcia-Ramirez; F Dong; J Ausio
Journal:  J Biol Chem       Date:  1992-09-25       Impact factor: 5.157

4.  Histone H4-K16 acetylation controls chromatin structure and protein interactions.

Authors:  Michael Shogren-Knaak; Haruhiko Ishii; Jian-Min Sun; Michael J Pazin; James R Davie; Craig L Peterson
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

5.  Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome.

Authors:  J Ausio; F Dong; K E van Holde
Journal:  J Mol Biol       Date:  1989-04-05       Impact factor: 5.469

6.  Core histone tail domains mediate oligonucleosome folding and nucleosomal DNA organization through distinct molecular mechanisms.

Authors:  T M Fletcher; J C Hansen
Journal:  J Biol Chem       Date:  1995-10-27       Impact factor: 5.157

7.  A direct link between core histone acetylation and transcriptionally active chromatin.

Authors:  T R Hebbes; A W Thorne; C Crane-Robinson
Journal:  EMBO J       Date:  1988-05       Impact factor: 11.598

8.  Participation of core histone "tails" in the stabilization of the chromatin solenoid.

Authors:  J Allan; N Harborne; D C Rau; H Gould
Journal:  J Cell Biol       Date:  1982-05       Impact factor: 10.539

9.  Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin.

Authors:  F Thoma; T Koller; A Klug
Journal:  J Cell Biol       Date:  1979-11       Impact factor: 10.539

10.  Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure.

Authors:  A S Belmont; K Bruce
Journal:  J Cell Biol       Date:  1994-10       Impact factor: 10.539

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  20 in total

1.  Histone Acetylation Regulates Chromatin Accessibility: Role of H4K16 in Inter-nucleosome Interaction.

Authors:  Ruihan Zhang; Jochen Erler; Jörg Langowski
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

2.  A nucleosome-free region locally abrogates histone H1-dependent restriction of linker DNA accessibility in chromatin.

Authors:  Laxmi Narayan Mishra; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2018-10-29       Impact factor: 5.157

3.  H4 Tails Potentially Produce the Diversity in the Orientation of Two Nucleosomes.

Authors:  Hisashi Ishida; Hidetoshi Kono
Journal:  Biophys J       Date:  2017-09-05       Impact factor: 4.033

Review 4.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

Review 5.  A brief review of nucleosome structure.

Authors:  Amber R Cutter; Jeffrey J Hayes
Journal:  FEBS Lett       Date:  2015-05-14       Impact factor: 4.124

Review 6.  The solid and liquid states of chromatin.

Authors:  Jeffrey C Hansen; Kazuhiro Maeshima; Michael J Hendzel
Journal:  Epigenetics Chromatin       Date:  2021-10-30       Impact factor: 4.954

7.  Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.

Authors:  Fanfan Hao; Kevin J Murphy; Tomoya Kujirai; Naoki Kamo; Junko Kato; Masako Koyama; Akimitsu Okamato; Gosuke Hayashi; Hitoshi Kurumizaka; Jeffrey J Hayes
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

8.  A method for assessing histone surface accessibility genome-wide.

Authors:  Luke T Marr; David J Clark; Jeffrey J Hayes
Journal:  Methods       Date:  2019-12-09       Impact factor: 3.608

9.  The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome.

Authors:  Emma A Morrison; Samuel Bowerman; Kelli L Sylvers; Jeff Wereszczynski; Catherine A Musselman
Journal:  Elife       Date:  2018-04-12       Impact factor: 8.140

Review 10.  Post-translational modifications of histones that influence nucleosome dynamics.

Authors:  Gregory D Bowman; Michael G Poirier
Journal:  Chem Rev       Date:  2014-11-26       Impact factor: 60.622

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