Literature DB >> 31103921

Role of H3K9me3 heterochromatin in cell identity establishment and maintenance.

Dario Nicetto1, Kenneth S Zaret2.   

Abstract

Compacted, transcriptionally repressed chromatin, referred to as heterochromatin, represents a major fraction of the higher eukaryotic genome and exerts pivotal functions of silencing repetitive elements, maintenance of genome stability, and control of gene expression. Among the different histone post-translational modifications (PTMs) associated with heterochromatin, tri-methylation of lysine 9 on histone H3 (H3K9me3) is gaining increased attention. Besides its known role in repressing repetitive elements and non-coding portions of the genome, recent observations indicate H3K9me3 as an important player in silencing lineage-inappropriate genes. The ability of H3K9me3 to influence cell identity challenges the original concept of H3K9me3-marked heterochromatin as mainly a constitutive type of chromatin and provides a further level of understanding of how to modulate cell fate control. Here, we summarize the role of H3K9me3 marked heterochromatin and its dynamics in establishing and maintaining cellular identity.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31103921      PMCID: PMC6759373          DOI: 10.1016/j.gde.2019.04.013

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  89 in total

1.  Epigenetics. Restricted epigenetic inheritance of H3K9 methylation.

Authors:  Pauline N C B Audergon; Sandra Catania; Alexander Kagansky; Pin Tong; Manu Shukla; Alison L Pidoux; Robin C Allshire
Journal:  Science       Date:  2015-04-03       Impact factor: 47.728

Review 2.  Heterochromatin and gene regulation in Drosophila.

Authors:  S C Elgin
Journal:  Curr Opin Genet Dev       Date:  1996-04       Impact factor: 5.578

3.  Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain.

Authors:  A J Bannister; P Zegerman; J F Partridge; E A Miska; J O Thomas; R C Allshire; T Kouzarides
Journal:  Nature       Date:  2001-03-01       Impact factor: 49.962

4.  Embryonic development following somatic cell nuclear transfer impeded by persisting histone methylation.

Authors:  Shogo Matoba; Yuting Liu; Falong Lu; Kumiko A Iwabuchi; Li Shen; Azusa Inoue; Yi Zhang
Journal:  Cell       Date:  2014-10-30       Impact factor: 41.582

5.  KMT1E mediated H3K9 methylation is required for the maintenance of embryonic stem cells by repressing trophectoderm differentiation.

Authors:  Felix Lohmann; Joseph Loureiro; Hui Su; Qing Fang; Hong Lei; Tanya Lewis; Yi Yang; Mark Labow; En Li; Taiping Chen; Shilpa Kadam
Journal:  Stem Cells       Date:  2010-02       Impact factor: 6.277

6.  The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin.

Authors:  Alejandra Loyola; Hideaki Tagami; Tiziana Bonaldi; Danièle Roche; Jean Pierre Quivy; Axel Imhof; Yoshihiro Nakatani; Sharon Y R Dent; Geneviève Almouzni
Journal:  EMBO Rep       Date:  2009-06-05       Impact factor: 8.807

7.  G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis.

Authors:  Makoto Tachibana; Kenji Sugimoto; Masami Nozaki; Jun Ueda; Tsutomu Ohta; Misao Ohki; Mikiko Fukuda; Naoki Takeda; Hiroyuki Niida; Hiroyuki Kato; Yoichi Shinkai
Journal:  Genes Dev       Date:  2002-07-15       Impact factor: 11.361

Review 8.  Epigenetic inheritance and reprogramming in plants and fission yeast.

Authors:  R A Martienssen; A Kloc; R K Slotkin; M Tanurdzić
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-03-27

9.  Polycomb Repressive Complex 2 Proteins EZH1 and EZH2 Regulate Timing of Postnatal Hepatocyte Maturation and Fibrosis by Repressing Genes With Euchromatic Promoters in Mice.

Authors:  Jessica Mae Grindheim; Dario Nicetto; Greg Donahue; Kenneth S Zaret
Journal:  Gastroenterology       Date:  2019-01-25       Impact factor: 22.682

10.  H3K56me3 is a novel, conserved heterochromatic mark that largely but not completely overlaps with H3K9me3 in both regulation and localization.

Authors:  Antonia P M Jack; Silva Bussemer; Matthias Hahn; Sebastian Pünzeler; Martha Snyder; Michael Wells; Gyorgyi Csankovszki; Irina Solovei; Gunnar Schotta; Sandra B Hake
Journal:  PLoS One       Date:  2013-02-22       Impact factor: 3.240

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  51 in total

Review 1.  Reprogramming: identifying the mechanisms that safeguard cell identity.

Authors:  Justin Brumbaugh; Bruno Di Stefano; Konrad Hochedlinger
Journal:  Development       Date:  2019-12-02       Impact factor: 6.868

Review 2.  In search of lost time: Enhancers as modulators of timing in lymphocyte development and differentiation.

Authors:  Jonathan M Chu; Nicholas A Pease; Hao Yuan Kueh
Journal:  Immunol Rev       Date:  2021-03-18       Impact factor: 12.988

3.  HP1 maintains protein stability of H3K9 methyltransferases and demethylases.

Authors:  Ryo Maeda; Makoto Tachibana
Journal:  EMBO Rep       Date:  2022-02-15       Impact factor: 8.807

Review 4.  Role of epigenetics in cellular reprogramming; from iPSCs to disease modeling and cell therapy.

Authors:  Yong Li; Radbod Darabi
Journal:  J Cell Biochem       Date:  2021-10-19       Impact factor: 4.429

5.  Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin.

Authors:  Martina Tedesco; Francesca Giannese; Dejan Lazarević; Valentina Giansanti; Dalia Rosano; Silvia Monzani; Irene Catalano; Elena Grassi; Eugenia R Zanella; Oronza A Botrugno; Leonardo Morelli; Paola Panina Bordignon; Giulio Caravagna; Andrea Bertotti; Gianvito Martino; Luca Aldrighetti; Sebastiano Pasqualato; Livio Trusolino; Davide Cittaro; Giovanni Tonon
Journal:  Nat Biotechnol       Date:  2021-10-11       Impact factor: 54.908

6.  N6-Methyladenosine co-transcriptionally directs the demethylation of histone H3K9me2.

Authors:  Yuan Li; Linjian Xia; Kaifen Tan; Xidong Ye; Zhixiang Zuo; Minchun Li; Rui Xiao; Zihan Wang; Xiaona Liu; Mingqiang Deng; Jinru Cui; Mengtian Yang; Qizhi Luo; Sun Liu; Xin Cao; Haoran Zhu; Tianqi Liu; Jiaxin Hu; Junfang Shi; Shan Xiao; Laixin Xia
Journal:  Nat Genet       Date:  2020-08-10       Impact factor: 38.330

Review 7.  Stem cell-intrinsic mechanisms regulating adult hair follicle homeostasis.

Authors:  Seon A Lee; Kefei Nina Li; Tudorita Tumbar
Journal:  Exp Dermatol       Date:  2020-12-20       Impact factor: 3.960

Review 8.  Employing core regulatory circuits to define cell identity.

Authors:  Nathalia Almeida; Matthew W H Chung; Elena M Drudi; Elise N Engquist; Eva Hamrud; Abigail Isaacson; Victoria S K Tsang; Fiona M Watt; Francesca M Spagnoli
Journal:  EMBO J       Date:  2021-05-02       Impact factor: 14.012

Review 9.  Interplay between chromatin marks in development and disease.

Authors:  Sanne M Janssen; Matthew C Lorincz
Journal:  Nat Rev Genet       Date:  2021-10-04       Impact factor: 53.242

10.  Chromatin states shaped by an epigenetic code confer regenerative potential to the mouse liver.

Authors:  Chi Zhang; Filippo Macchi; Elena Magnani; Kirsten C Sadler
Journal:  Nat Commun       Date:  2021-07-05       Impact factor: 14.919

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