Literature DB >> 29623248

Holistic classification of CT attenuation patterns for interstitial lung diseases via deep convolutional neural networks.

Mingchen Gao1, Ulas Bagci2, Le Lu1, Aaron Wu1, Mario Buty1, Hoo-Chang Shin1, Holger Roth1, Georgios Z Papadakis1, Adrien Depeursinge3, Ronald M Summers1, Ziyue Xu1, Daniel J Mollura1.   

Abstract

Interstitial lung diseases (ILD) involve several abnormal imaging patterns observed in computed tomography (CT) images. Accurate classification of these patterns plays a significant role in precise clinical decision making of the extent and nature of the diseases. Therefore, it is important for developing automated pulmonary computer-aided detection systems. Conventionally, this task relies on experts' manual identification of regions of interest (ROIs) as a prerequisite to diagnose potential diseases. This protocol is time consuming and inhibits fully automatic assessment. In this paper, we present a new method to classify ILD imaging patterns on CT images. The main difference is that the proposed algorithm uses the entire image as a holistic input. By circumventing the prerequisite of manual input ROIs, our problem set-up is significantly more difficult than previous work but can better address the clinical workflow. Qualitative and quantitative results using a publicly available ILD database demonstrate state-of-the-art classification accuracy under the patch-based classification and shows the potential of predicting the ILD type using holistic image.

Entities:  

Keywords:  Interstitial lung disease; convolutional neural network; holistic medical image classification

Year:  2016        PMID: 29623248      PMCID: PMC5881940          DOI: 10.1080/21681163.2015.1124249

Source DB:  PubMed          Journal:  Comput Methods Biomech Biomed Eng Imaging Vis        ISSN: 2168-1163


  9 in total

1.  Near-affine-invariant texture learning for lung tissue analysis using isotropic wavelet frames.

Authors:  Adrien Depeursinge; Dimitri Van de Ville; Alexandra Platon; Antoine Geissbuhler; Pierre-Alexandre Poletti; Henning Müller
Journal:  IEEE Trans Inf Technol Biomed       Date:  2012-05-11

2.  Building a reference multimedia database for interstitial lung diseases.

Authors:  Adrien Depeursinge; Alejandro Vargas; Alexandra Platon; Antoine Geissbuhler; Pierre-Alexandre Poletti; Henning Müller
Journal:  Comput Med Imaging Graph       Date:  2011-07-30       Impact factor: 4.790

3.  Large Margin Local Estimate With Applications to Medical Image Classification.

Authors:  Yang Song; Weidong Cai; Heng Huang; Yun Zhou; David Dagan Feng; Michael J Fulham; Mei Chen
Journal:  IEEE Trans Med Imaging       Date:  2015-01-19       Impact factor: 10.048

4.  Feature-based image patch approximation for lung tissue classification.

Authors:  Yang Song; Weidong Cai; Yun Zhou; David Dagan Feng
Journal:  IEEE Trans Med Imaging       Date:  2013-01-18       Impact factor: 10.048

5.  Deep feature learning for knee cartilage segmentation using a triplanar convolutional neural network.

Authors:  Adhish Prasoon; Kersten Petersen; Christian Igel; François Lauze; Erik Dam; Mads Nielsen
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

6.  Mitosis detection in breast cancer histology images with deep neural networks.

Authors:  Dan C Cireşan; Alessandro Giusti; Luca M Gambardella; Jürgen Schmidhuber
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

7.  Automatic detection and quantification of tree-in-bud (TIB) opacities from CT scans.

Authors:  Ulas Bagci; Jianhua Yao; Albert Wu; Jesus Caban; Tara N Palmore; Anthony F Suffredini; Omer Aras; Daniel J Mollura
Journal:  IEEE Trans Biomed Eng       Date:  2012-03-14       Impact factor: 4.538

8.  A new 2.5D representation for lymph node detection using random sets of deep convolutional neural network observations.

Authors:  Holger R Roth; Le Lu; Ari Seff; Kevin M Cherry; Joanne Hoffman; Shijun Wang; Jiamin Liu; Evrim Turkbey; Ronald M Summers
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

Review 9.  Computer-assisted detection of infectious lung diseases: a review.

Authors:  Ulaş Bağcı; Mike Bray; Jesus Caban; Jianhua Yao; Daniel J Mollura
Journal:  Comput Med Imaging Graph       Date:  2011-07-01       Impact factor: 4.790

  9 in total
  28 in total

1.  Lymphocyte-driven regional immunopathology in pneumonitis caused by impaired central immune tolerance.

Authors:  Elise M N Ferré; Timothy J Break; Peter D Burbelo; Michael Allgäuer; David E Kleiner; Dakai Jin; Ziyue Xu; Les R Folio; Daniel J Mollura; Muthulekha Swamydas; Wenjuan Gu; Sally Hunsberger; Chyi-Chia R Lee; Anamaria Bondici; Kevin W Hoffman; Jean K Lim; Kerry Dobbs; Julie E Niemela; Thomas A Fleisher; Amy P Hsu; Laquita N Snow; Dirk N Darnell; Samar Ojaimi; Megan A Cooper; Martin Bozzola; Gary I Kleiner; Juan C Martinez; Robin R Deterding; Douglas B Kuhns; Theo Heller; Karen K Winer; Arun Rajan; Steven M Holland; Luigi D Notarangelo; Kevin P Fennelly; Kenneth N Olivier; Michail S Lionakis
Journal:  Sci Transl Med       Date:  2019-06-05       Impact factor: 17.956

2.  Deep convolutional neural networks with multiplane consensus labeling for lung function quantification using UTE proton MRI.

Authors:  Wei Zha; Sean B Fain; Mark L Schiebler; Michael D Evans; Scott K Nagle; Fang Liu
Journal:  J Magn Reson Imaging       Date:  2019-04-04       Impact factor: 4.813

3.  Lung cancer histology classification from CT images based on radiomics and deep learning models.

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Journal:  Med Biol Eng Comput       Date:  2021-01-07       Impact factor: 2.602

4.  Comparison of Shallow and Deep Learning Methods on Classifying the Regional Pattern of Diffuse Lung Disease.

Authors:  Guk Bae Kim; Kyu-Hwan Jung; Yeha Lee; Hyun-Jun Kim; Namkug Kim; Sanghoon Jun; Joon Beom Seo; David A Lynch
Journal:  J Digit Imaging       Date:  2018-08       Impact factor: 4.056

Review 5.  Deep Learning in Medical Image Analysis.

Authors:  Dinggang Shen; Guorong Wu; Heung-Il Suk
Journal:  Annu Rev Biomed Eng       Date:  2017-03-09       Impact factor: 9.590

6.  A deep convolutional neural network architecture for interstitial lung disease pattern classification.

Authors:  Sheng Huang; Feifei Lee; Ran Miao; Qin Si; Chaowen Lu; Qiu Chen
Journal:  Med Biol Eng Comput       Date:  2020-01-22       Impact factor: 2.602

7.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

Authors:  Hoo-Chang Shin; Holger R Roth; Mingchen Gao; Le Lu; Ziyue Xu; Isabella Nogues; Jianhua Yao; Daniel Mollura; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2016-02-11       Impact factor: 10.048

Review 8.  [Artificial intelligence in lung imaging].

Authors:  F Prayer; S Röhrich; J Pan; J Hofmanninger; G Langs; H Prosch
Journal:  Radiologe       Date:  2020-01       Impact factor: 0.635

9.  Automated detection of Covid-19 disease using deep fused features from chest radiography images.

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Journal:  Biomed Signal Process Control       Date:  2021-06-11       Impact factor: 3.880

Review 10.  Applications of artificial intelligence and deep learning in molecular imaging and radiotherapy.

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Journal:  Eur J Hybrid Imaging       Date:  2020-09-23
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