Literature DB >> 21803548

Building a reference multimedia database for interstitial lung diseases.

Adrien Depeursinge1, Alejandro Vargas, Alexandra Platon, Antoine Geissbuhler, Pierre-Alexandre Poletti, Henning Müller.   

Abstract

This paper describes the methodology used to create a multimedia collection of cases with interstitial lung diseases (ILDs) at the University Hospitals of Geneva. The dataset contains high-resolution computed tomography (HRCT) image series with three-dimensional annotated regions of pathological lung tissue along with clinical parameters from patients with pathologically proven diagnoses of ILDs. The motivations for this work is to palliate the lack of publicly available collections of ILD cases to serve as a basis for the development and evaluation of image-based computerized diagnostic aid. After 38 months of data collection, the library contains 128 patients affected with one of the 13 histological diagnoses of ILDs, 108 image series with more than 41l of annotated lung tissue patterns as well as a comprehensive set of 99 clinical parameters related to ILDs. The database is available for research on request and after signature of a license agreement. Copyright Â
© 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21803548     DOI: 10.1016/j.compmedimag.2011.07.003

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  25 in total

1.  Holistic classification of CT attenuation patterns for interstitial lung diseases via deep convolutional neural networks.

Authors:  Mingchen Gao; Ulas Bagci; Le Lu; Aaron Wu; Mario Buty; Hoo-Chang Shin; Holger Roth; Georgios Z Papadakis; Adrien Depeursinge; Ronald M Summers; Ziyue Xu; Daniel J Mollura
Journal:  Comput Methods Biomech Biomed Eng Imaging Vis       Date:  2016-06-06

2.  Lymphocyte-driven regional immunopathology in pneumonitis caused by impaired central immune tolerance.

Authors:  Elise M N Ferré; Timothy J Break; Peter D Burbelo; Michael Allgäuer; David E Kleiner; Dakai Jin; Ziyue Xu; Les R Folio; Daniel J Mollura; Muthulekha Swamydas; Wenjuan Gu; Sally Hunsberger; Chyi-Chia R Lee; Anamaria Bondici; Kevin W Hoffman; Jean K Lim; Kerry Dobbs; Julie E Niemela; Thomas A Fleisher; Amy P Hsu; Laquita N Snow; Dirk N Darnell; Samar Ojaimi; Megan A Cooper; Martin Bozzola; Gary I Kleiner; Juan C Martinez; Robin R Deterding; Douglas B Kuhns; Theo Heller; Karen K Winer; Arun Rajan; Steven M Holland; Luigi D Notarangelo; Kevin P Fennelly; Kenneth N Olivier; Michail S Lionakis
Journal:  Sci Transl Med       Date:  2019-06-05       Impact factor: 17.956

3.  Ziehl-Neelsen sputum smear microscopy image database: a resource to facilitate automated bacilli detection for tuberculosis diagnosis.

Authors:  Mohammad Imran Shah; Smriti Mishra; Vinod Kumar Yadav; Arun Chauhan; Malay Sarkar; Sudarshan K Sharma; Chittaranjan Rout
Journal:  J Med Imaging (Bellingham)       Date:  2017-06-30

4.  Interstitial lung abnormalities detected incidentally on CT: a Position Paper from the Fleischner Society.

Authors:  Hiroto Hatabu; Gary M Hunninghake; Luca Richeldi; Kevin K Brown; Athol U Wells; Martine Remy-Jardin; Johny Verschakelen; Andrew G Nicholson; Mary B Beasley; David C Christiani; Raúl San José Estépar; Joon Beom Seo; Takeshi Johkoh; Nicola Sverzellati; Christopher J Ryerson; R Graham Barr; Jin Mo Goo; John H M Austin; Charles A Powell; Kyung Soo Lee; Yoshikazu Inoue; David A Lynch
Journal:  Lancet Respir Med       Date:  2020-07       Impact factor: 30.700

5.  Case-based lung image categorization and retrieval for interstitial lung diseases: clinical workflows.

Authors:  Adrien Depeursinge; Alejandro Vargas; Frédéric Gaillard; Alexandra Platon; Antoine Geissbuhler; Pierre-Alexandre Poletti; Henning Müller
Journal:  Int J Comput Assist Radiol Surg       Date:  2011-06-01       Impact factor: 2.924

Review 6.  Deep learning: definition and perspectives for thoracic imaging.

Authors:  Guillaume Chassagnon; Maria Vakalopolou; Nikos Paragios; Marie-Pierre Revel
Journal:  Eur Radiol       Date:  2019-12-06       Impact factor: 5.315

7.  A deep convolutional neural network architecture for interstitial lung disease pattern classification.

Authors:  Sheng Huang; Feifei Lee; Ran Miao; Qin Si; Chaowen Lu; Qiu Chen
Journal:  Med Biol Eng Comput       Date:  2020-01-22       Impact factor: 2.602

8.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

Authors:  Hoo-Chang Shin; Holger R Roth; Mingchen Gao; Le Lu; Ziyue Xu; Isabella Nogues; Jianhua Yao; Daniel Mollura; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2016-02-11       Impact factor: 10.048

9.  Deep Learning-based Approach for Automated Assessment of Interstitial Lung Disease in Systemic Sclerosis on CT Images.

Authors:  Guillaume Chassagnon; Maria Vakalopoulou; Alexis Régent; Evangelia I Zacharaki; Galit Aviram; Charlotte Martin; Rafael Marini; Norbert Bus; Naïm Jerjir; Arsène Mekinian; Thông Hua-Huy; Laurence Monnier-Cholley; Nouria Benmostefa; Luc Mouthon; Anh-Tuan Dinh-Xuan; Nikos Paragios; Marie-Pierre Revel
Journal:  Radiol Artif Intell       Date:  2020-07-15

10.  Capsules for biomedical image segmentation.

Authors:  Rodney LaLonde; Ziyue Xu; Ismail Irmakci; Sanjay Jain; Ulas Bagci
Journal:  Med Image Anal       Date:  2020-11-05       Impact factor: 8.545

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