Literature DB >> 29043528

Comparison of Shallow and Deep Learning Methods on Classifying the Regional Pattern of Diffuse Lung Disease.

Guk Bae Kim1, Kyu-Hwan Jung2, Yeha Lee2, Hyun-Jun Kim2, Namkug Kim3, Sanghoon Jun4, Joon Beom Seo5, David A Lynch6.   

Abstract

This study aimed to compare shallow and deep learning of classifying the patterns of interstitial lung diseases (ILDs). Using high-resolution computed tomography images, two experienced radiologists marked 1200 regions of interest (ROIs), in which 600 ROIs were each acquired using a GE or Siemens scanner and each group of 600 ROIs consisted of 100 ROIs for subregions that included normal and five regional pulmonary disease patterns (ground-glass opacity, consolidation, reticular opacity, emphysema, and honeycombing). We employed the convolution neural network (CNN) with six learnable layers that consisted of four convolution layers and two fully connected layers. The classification results were compared with the results classified by a shallow learning of a support vector machine (SVM). The CNN classifier showed significantly better performance for accuracy compared with that of the SVM classifier by 6-9%. As the convolution layer increases, the classification accuracy of the CNN showed better performance from 81.27 to 95.12%. Especially in the cases showing pathological ambiguity such as between normal and emphysema cases or between honeycombing and reticular opacity cases, the increment of the convolution layer greatly drops the misclassification rate between each case. Conclusively, the CNN classifier showed significantly greater accuracy than the SVM classifier, and the results implied structural characteristics that are inherent to the specific ILD patterns.

Entities:  

Keywords:  Convolution neural network; Deep architecture; Interscanner variation; Interstitial lung disease; Support vector machine

Mesh:

Year:  2018        PMID: 29043528      PMCID: PMC6113148          DOI: 10.1007/s10278-017-0028-9

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  24 in total

1.  Utility of high-resolution CT for management of diffuse lung disease: results of a survey of U.S. pulmonary physicians.

Authors:  John C Scatarige; Gregory B Diette; Edward F Haponik; Barry Merriman; Elliot K Fishman
Journal:  Acad Radiol       Date:  2003-02       Impact factor: 3.173

2.  Holistic classification of CT attenuation patterns for interstitial lung diseases via deep convolutional neural networks.

Authors:  Mingchen Gao; Ulas Bagci; Le Lu; Aaron Wu; Mario Buty; Hoo-Chang Shin; Holger Roth; Georgios Z Papadakis; Adrien Depeursinge; Ronald M Summers; Ziyue Xu; Daniel J Mollura
Journal:  Comput Methods Biomech Biomed Eng Imaging Vis       Date:  2016-06-06

3.  Measurement of pulmonary parenchymal attenuation: use of spirometric gating with quantitative CT.

Authors:  W A Kalender; R Rienmüller; W Seissler; J Behr; M Welke; H Fichte
Journal:  Radiology       Date:  1990-04       Impact factor: 11.105

4.  Incidence and prevalence of idiopathic pulmonary fibrosis.

Authors:  Ganesh Raghu; Derek Weycker; John Edelsberg; Williamson Z Bradford; Gerry Oster
Journal:  Am J Respir Crit Care Med       Date:  2006-06-29       Impact factor: 21.405

5.  Computer recognition of regional lung disease patterns.

Authors:  R Uppaluri; E A Hoffman; M Sonka; P G Hartley; G W Hunninghake; G McLennan
Journal:  Am J Respir Crit Care Med       Date:  1999-08       Impact factor: 21.405

6.  Obstructive lung diseases: texture classification for differentiation at CT.

Authors:  Francois Chabat; Guang-Zhong Yang; David M Hansell
Journal:  Radiology       Date:  2003-07-17       Impact factor: 11.105

7.  A deep learning architecture for image representation, visual interpretability and automated basal-cell carcinoma cancer detection.

Authors:  Angel Alfonso Cruz-Roa; John Edison Arevalo Ovalle; Anant Madabhushi; Fabio Augusto González Osorio
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

8.  Quantitative assessment of change in regional disease patterns on serial HRCT of fibrotic interstitial pneumonia with texture-based automated quantification system.

Authors:  Ra Gyoung Yoon; Joon Beom Seo; Namkug Kim; Hyun Joo Lee; Sang Min Lee; Young Kyung Lee; Jae Woo Song; Jin Woo Song; Dong Soon Kim
Journal:  Eur Radiol       Date:  2012-08-24       Impact factor: 5.315

9.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

Authors:  Hoo-Chang Shin; Holger R Roth; Mingchen Gao; Le Lu; Ziyue Xu; Isabella Nogues; Jianhua Yao; Daniel Mollura; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2016-02-11       Impact factor: 10.048

10.  Characterization of the interstitial lung diseases via density-based and texture-based analysis of computed tomography images of lung structure and function.

Authors:  Eric A Hoffman; Joseph M Reinhardt; Milan Sonka; Brett A Simon; Junfeng Guo; Osama Saba; Deokiee Chon; Shaher Samrah; Hidenori Shikata; Juerg Tschirren; Kalman Palagyi; Kenneth C Beck; Geoffrey McLennan
Journal:  Acad Radiol       Date:  2003-10       Impact factor: 3.173

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  20 in total

1.  MUC5B variant is associated with visually and quantitatively detected preclinical pulmonary fibrosis.

Authors:  Susan K Mathai; Stephen Humphries; Jonathan A Kropski; Timothy S Blackwell; Julia Powers; Avram D Walts; Cheryl Markin; Julia Woodward; Jonathan H Chung; Kevin K Brown; Mark P Steele; James E Loyd; Marvin I Schwarz; Tasha Fingerlin; Ivana V Yang; David A Lynch; David A Schwartz
Journal:  Thorax       Date:  2019-09-26       Impact factor: 9.139

2.  Interstitial lung abnormalities detected incidentally on CT: a Position Paper from the Fleischner Society.

Authors:  Hiroto Hatabu; Gary M Hunninghake; Luca Richeldi; Kevin K Brown; Athol U Wells; Martine Remy-Jardin; Johny Verschakelen; Andrew G Nicholson; Mary B Beasley; David C Christiani; Raúl San José Estépar; Joon Beom Seo; Takeshi Johkoh; Nicola Sverzellati; Christopher J Ryerson; R Graham Barr; Jin Mo Goo; John H M Austin; Charles A Powell; Kyung Soo Lee; Yoshikazu Inoue; David A Lynch
Journal:  Lancet Respir Med       Date:  2020-07       Impact factor: 30.700

3.  Lung Segmentation on HRCT and Volumetric CT for Diffuse Interstitial Lung Disease Using Deep Convolutional Neural Networks.

Authors:  Beomhee Park; Heejun Park; Sang Min Lee; Joon Beom Seo; Namkug Kim
Journal:  J Digit Imaging       Date:  2019-12       Impact factor: 4.056

4.  Potential of a machine-learning model for dose optimization in CT quality assurance.

Authors:  Axel Meineke; Christian Rubbert; Lino M Sawicki; Christoph Thomas; Yan Klosterkemper; Elisabeth Appel; Julian Caspers; Oliver T Bethge; Patric Kröpil; Gerald Antoch; Johannes Boos
Journal:  Eur Radiol       Date:  2019-02-19       Impact factor: 5.315

5.  Unsupervised Deep Anomaly Detection for Medical Images Using an Improved Adversarial Autoencoder.

Authors:  Haibo Zhang; Wenping Guo; Shiqing Zhang; Hongsheng Lu; Xiaoming Zhao
Journal:  J Digit Imaging       Date:  2022-01-10       Impact factor: 4.056

6.  A Perlin Noise-Based Augmentation Strategy for Deep Learning with Small Data Samples of HRCT Images.

Authors:  Hyun-Jin Bae; Chang-Wook Kim; Namju Kim; BeomHee Park; Namkug Kim; Joon Beom Seo; Sang Min Lee
Journal:  Sci Rep       Date:  2018-12-06       Impact factor: 4.379

7.  Label-free classification of cells based on supervised machine learning of subcellular structures.

Authors:  Yusuke Ozaki; Hidenao Yamada; Hirotoshi Kikuchi; Amane Hirotsu; Tomohiro Murakami; Tomohiro Matsumoto; Toshiki Kawabata; Yoshihiro Hiramatsu; Kinji Kamiya; Toyohiko Yamauchi; Kentaro Goto; Yukio Ueda; Shigetoshi Okazaki; Masatoshi Kitagawa; Hiroya Takeuchi; Hiroyuki Konno
Journal:  PLoS One       Date:  2019-01-29       Impact factor: 3.240

Review 8.  Immunotherapy Associated Pulmonary Toxicity: Biology Behind Clinical and Radiological Features.

Authors:  Michele Porcu; Pushpamali De Silva; Cinzia Solinas; Angelo Battaglia; Marina Schena; Mario Scartozzi; Dominique Bron; Jasjit S Suri; Karen Willard-Gallo; Dario Sangiolo; Luca Saba
Journal:  Cancers (Basel)       Date:  2019-03-05       Impact factor: 6.639

Review 9.  [Artificial intelligence in lung imaging].

Authors:  F Prayer; S Röhrich; J Pan; J Hofmanninger; G Langs; H Prosch
Journal:  Radiologe       Date:  2020-01       Impact factor: 0.635

Review 10.  Interstitial Lung Abnormalities: State of the Art.

Authors:  Akinori Hata; Mark L Schiebler; David A Lynch; Hiroto Hatabu
Journal:  Radiology       Date:  2021-08-10       Impact factor: 29.146

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