Literature DB >> 33124814

Microchip-Based Structure Determination of Disease-Relevant p53.

Maria J Solares1,2,3, G M Jonaid4,2,3, William Y Luqiu3,5, Yanping Liang6, Madison C Evans2, William J Dearnaley2,3, Zhi Sheng6, Deborah F Kelly2,3.   

Abstract

The tumor suppressor protein TP53 (p53) plays a multifaceted role in all cells of the human body. Mutations in the TP53 gene are often involved in cancer induction and disease progression. Despite its important role in health and development, structural information for p53 remains incomplete. Here, we present a microchip-based technology to facilitate structural studies of p53 assemblies derived from human cancer cells. These devices do not introduce foreign sequences to the p53 gene and maintain naturally occurring post-translational modifications. Using cryo-electron microscopy, structures for the p53 monomer (∼50 kDa) and tetramer (∼200 kDa) were resolved to ∼4.8 and ∼7 Å, respectively. These structures revealed new insights for flexible regions of p53 along with biologically relevant ubiquitination sites. Collectively, the convergence of nanotechnology tools and structural imaging builds a strong framework to understand the oncogenic impact of p53 in human tissues.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 33124814      PMCID: PMC7816086          DOI: 10.1021/acs.analchem.0c03599

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  29 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

Review 2.  Ubiquitination, phosphorylation and acetylation: the molecular basis for p53 regulation.

Authors:  Christopher L Brooks; Wei Gu
Journal:  Curr Opin Cell Biol       Date:  2003-04       Impact factor: 8.382

3.  Structural basis of DNA recognition by p53 tetramers.

Authors:  Malka Kitayner; Haim Rozenberg; Naama Kessler; Dov Rabinovich; Lihi Shaulov; Tali E Haran; Zippora Shakked
Journal:  Mol Cell       Date:  2006-06-23       Impact factor: 17.970

Review 4.  The role of ubiquitination in the direct mitochondrial death program of p53.

Authors:  Natasha D Marchenko; Ute M Moll
Journal:  Cell Cycle       Date:  2007-05-25       Impact factor: 4.534

Review 5.  A complex barcode underlies the heterogeneous response of p53 to stress.

Authors:  Fiona Murray-Zmijewski; Elizabeth A Slee; Xin Lu
Journal:  Nat Rev Mol Cell Biol       Date:  2008-09       Impact factor: 94.444

6.  The somatic genomic landscape of glioblastoma.

Authors:  Cameron W Brennan; Roel G W Verhaak; Aaron McKenna; Benito Campos; Houtan Noushmehr; Sofie R Salama; Siyuan Zheng; Debyani Chakravarty; J Zachary Sanborn; Samuel H Berman; Rameen Beroukhim; Brady Bernard; Chang-Jiun Wu; Giannicola Genovese; Ilya Shmulevich; Jill Barnholtz-Sloan; Lihua Zou; Rahulsimham Vegesna; Sachet A Shukla; Giovanni Ciriello; W K Yung; Wei Zhang; Carrie Sougnez; Tom Mikkelsen; Kenneth Aldape; Darell D Bigner; Erwin G Van Meir; Michael Prados; Andrew Sloan; Keith L Black; Jennifer Eschbacher; Gaetano Finocchiaro; William Friedman; David W Andrews; Abhijit Guha; Mary Iacocca; Brian P O'Neill; Greg Foltz; Jerome Myers; Daniel J Weisenberger; Robert Penny; Raju Kucherlapati; Charles M Perou; D Neil Hayes; Richard Gibbs; Marco Marra; Gordon B Mills; Eric Lander; Paul Spellman; Richard Wilson; Chris Sander; John Weinstein; Matthew Meyerson; Stacey Gabriel; Peter W Laird; David Haussler; Gad Getz; Lynda Chin
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

7.  The human homologs of checkpoint kinases Chk1 and Cds1 (Chk2) phosphorylate p53 at multiple DNA damage-inducible sites.

Authors:  S Y Shieh; J Ahn; K Tamai; Y Taya; C Prives
Journal:  Genes Dev       Date:  2000-02-01       Impact factor: 11.361

Review 8.  The tumor suppressor p53: from structures to drug discovery.

Authors:  Andreas C Joerger; Alan R Fersht
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02-10       Impact factor: 10.005

9.  PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse.

Authors:  Peter V Hornbeck; Jon M Kornhauser; Sasha Tkachev; Bin Zhang; Elzbieta Skrzypek; Beth Murray; Vaughan Latham; Michael Sullivan
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

Review 10.  Mechanisms of transcriptional regulation by p53.

Authors:  Kelly D Sullivan; Matthew D Galbraith; Zdenek Andrysik; Joaquin M Espinosa
Journal:  Cell Death Differ       Date:  2017-11-10       Impact factor: 15.828

View more
  1 in total

1.  High-Resolution Imaging of Human Cancer Proteins Using Microprocessor Materials.

Authors:  Maria J Solares; G M Jonaid; William Y Luqiu; Samantha Berry; Janki Khadela; Yanping Liang; Madison C Evans; Kevin J Pridham; William J Dearnaley; Zhi Sheng; Deborah F Kelly
Journal:  Chembiochem       Date:  2022-07-14       Impact factor: 3.461

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.