Literature DB >> 35789183

High-Resolution Imaging of Human Cancer Proteins Using Microprocessor Materials.

Maria J Solares1,2,3, G M Jonaid4,2,3, William Y Luqiu3,5, Samantha Berry2,3, Janki Khadela2,3, Yanping Liang6, Madison C Evans2,3, Kevin J Pridham6, William J Dearnaley2,3, Zhi Sheng6, Deborah F Kelly2,3.   

Abstract

Mutations in tumor suppressor genes, such as Tumor Protein 53 (TP53), are heavily implicated in aggressive cancers giving rise to gain- and loss-of-function phenotypes. While individual domains of the p53 protein have been studied extensively, structural information for full-length p53 remains incomplete. Functionalized microprocessor chips (microchips) with properties amenable to electron microscopy permitted us to visualize complete p53 assemblies for the first time. The new structures revealed p53 in an inactive dimeric state independent of DNA binding. Residues located at the protein-protein interface corresponded with modification sites in cancer-related hot spots. Changes in these regions may amplify the toxic effects of clinical mutations. Taken together, these results contribute advances in technology and imaging approaches to decode native protein models in different states of activation.
© 2022 Wiley-VCH GmbH.

Entities:  

Keywords:  cancer; electron microscopy; microchips; p53, molecular modeling

Mesh:

Substances:

Year:  2022        PMID: 35789183      PMCID: PMC9574649          DOI: 10.1002/cbic.202200310

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.461


  44 in total

1.  The revolution will not be crystallized: a new method sweeps through structural biology.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2015-09-10       Impact factor: 49.962

2.  The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity.

Authors:  Andrei L Okorokov; Michael B Sherman; Celia Plisson; Vera Grinkevich; Kristmundur Sigmundsson; Galina Selivanova; Jo Milner; Elena V Orlova
Journal:  EMBO J       Date:  2006-10-19       Impact factor: 11.598

3.  MolProbity: More and better reference data for improved all-atom structure validation.

Authors:  Christopher J Williams; Jeffrey J Headd; Nigel W Moriarty; Michael G Prisant; Lizbeth L Videau; Lindsay N Deis; Vishal Verma; Daniel A Keedy; Bradley J Hintze; Vincent B Chen; Swati Jain; Steven M Lewis; W Bryan Arendall; Jack Snoeyink; Paul D Adams; Simon C Lovell; Jane S Richardson; David C Richardson
Journal:  Protein Sci       Date:  2017-11-27       Impact factor: 6.725

4.  Tip60-dependent acetylation of p53 modulates the decision between cell-cycle arrest and apoptosis.

Authors:  Yi Tang; Jianyuan Luo; Wenzhu Zhang; Wei Gu
Journal:  Mol Cell       Date:  2006-12-28       Impact factor: 17.970

5.  Acetylation of p53 Protein at Lysine 120 Up-regulates Apaf-1 Protein and Sensitizes the Mitochondrial Apoptotic Pathway.

Authors:  Tao Yun; Kaiwen Yu; ShuangShuang Yang; Yifan Cui; Zixi Wang; Huiyu Ren; She Chen; Lin Li; Xiaoyun Liu; Min Fang; Xuejun Jiang
Journal:  J Biol Chem       Date:  2016-02-05       Impact factor: 5.157

6.  Preparation of Tunable Microchips to Visualize Native Protein Complexes for Single-Particle Electron Microscopy.

Authors:  Brian L Gilmore; A Cameron Varano; William Dearnaley; Yanping Liang; Bridget C Marcinkowski; Madeline J Dukes; Deborah F Kelly
Journal:  Methods Mol Biol       Date:  2018

7.  Quaternary structures of tumor suppressor p53 and a specific p53 DNA complex.

Authors:  Henning Tidow; Roberto Melero; Efstratios Mylonas; Stefan M V Freund; J Guenter Grossmann; José María Carazo; Dmitri I Svergun; Mikel Valle; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

8.  A microchip platform for structural oncology applications.

Authors:  Carly E Winton; Brian L Gilmore; Andrew C Demmert; Vasilea Karageorge; Zhi Sheng; Deborah F Kelly
Journal:  NPJ Breast Cancer       Date:  2016-06-15

9.  Biological Impact of Silicon Nitride for Orthopaedic Applications: Role of Particle Size, Surface Composition and Donor Variation.

Authors:  Saurabh Lal; Emily A Caseley; Richard M Hall; Joanne L Tipper
Journal:  Sci Rep       Date:  2018-06-14       Impact factor: 4.379

10.  Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.

Authors:  Dorothee Liebschner; Pavel V Afonine; Matthew L Baker; Gábor Bunkóczi; Vincent B Chen; Tristan I Croll; Bradley Hintze; Li Wei Hung; Swati Jain; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Billy K Poon; Michael G Prisant; Randy J Read; Jane S Richardson; David C Richardson; Massimo D Sammito; Oleg V Sobolev; Duncan H Stockwell; Thomas C Terwilliger; Alexandre G Urzhumtsev; Lizbeth L Videau; Christopher J Williams; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-02       Impact factor: 7.652

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